On 09/10/2012 01:40 PM, Nicholas Stong wrote:
> Used SRAdb in the past but couldn't load the database today.
> trying URL
> Error in download.file(url_sra, destfile = localfile, mode = "wb",
> method) :
> cannot open URL
this 'worked for me'; maybe it was transient or you're behind a
firewall? Can you access the url in a web browser?
R version 2.15.1 Patched (2012-08-26 r60438)
Platform: x86_64-unknown-linux-gnu (64-bit)
 LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
 LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
 LC_PAPER=C LC_NAME=C
 LC_ADDRESS=C LC_TELEPHONE=C
 LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
 stats graphics grDevices utils datasets methods base
other attached packages:
 SRAdb_1.10.0 RCurl_1.91-1 bitops_1.0-4.1
 graph_1.34.0 RSQLite_0.11.1 DBI_0.2-5
loaded via a namespace (and not attached):
 Biobase_2.16.0 BiocGenerics_0.2.0 GEOquery_2.23.5
> I see that this backup database url is not found, and the primary
> http://watson.nci.nih.gov/~zhujack/SRAmetadb.sqlite.gz, says
> this version and links out of date? Any help would be appreciated.
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
does anybody know if there is any way in the topGO package to force
full-length descriptions of the GO terms to be printed in the graph?
default, only about 20 characters of the descriptions are printed.
Thanks for your help!
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.