CDF file for Mouse Gene 1.1 ST Array
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chenjunhui ▴ 10
@chenjunhui-5498
Last seen 8.2 years ago
Dear sir, I'm solving GEO express CEL file about mouse,but I can't find CDF fie of mouse gene 1.1 st array.can you give me some suggestions about this problem ,thank you very much Yours sincerely ,junhui,chen [[alternative HTML version deleted]]
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@benilton-carvalho-1375
Last seen 2.7 years ago
Brazil/Campinas/UNICAMP
One alternative is to use the oligo package: library(oligo) cels = list.celfiles() raw = read.celfiles(cels) summaryCore = rma(raw) When reading the CEL files, the appropriate annotation package will be automagically installed. b On 13 September 2012 08:34, chenjunhui <chenjhbio at="" 163.com=""> wrote: > Dear sir, > > I'm solving GEO express CEL file about mouse,but I can't find CDF fie of > mouse gene 1.1 st array.can you give me some suggestions about this problem > ,thank you very much > > Yours sincerely ,junhui,chen > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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@groot-philip-de-1307
Last seen 8.2 years ago
Hi junhui,chen, I make the CDFs available on: http://nmg-r.bioinformatics.nl/NuGO_R.html Direct link: Linux: http://nmg-r.bioinformatics.nl/Custom_CDF_DB_V15.1.0/src/contri b/hugene11stv1cdf_2.5.0.tar.gz Windows: http://nmg-r.bioinformatics.nl/Custom_CDF_DB_V15.1.0/bin/wind ows/contrib/2.15/hugene11stv1cdf_2.5.0.zip Regards, Dr. Philip de Groot Bioinformatician / Microarray analysis expert Wageningen University / TIFN Netherlands Nutrigenomics Center (NNC) Nutrition, Metabolism & Genomics Group Division of Human Nutrition PO Box 8129, 6700 EV Wageningen Visiting Address: "De Valk" ("Erfelijkheidsleer"), Building 304, Verbindingsweg 4, 6703 HC Wageningen Room: 0052a T: 0317 485786 F: 0317 483342 E-mail: Philip.deGroot at wur.nl I:???????? http://humannutrition.wur.nl https://madmax.bioinformatics.nl http://www.nutrigenomicsconsortium.nl -----Original Message----- From: chenjunhui [mailto:chenjhbio@163.com] Sent: donderdag 13 september 2012 9:35 To: bioconductor at r-project.org Subject: Re: [BioC] CDF file for Mouse Gene 1.1 ST Array Dear sir, I'm solving GEO express CEL file about mouse,but I can't find CDF fie of mouse gene 1.1 st array.can you give me some suggestions about this problem ,thank you very much Yours sincerely ,junhui,chen [[alternative HTML version deleted]]
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