Dear Bioconductor users, Should the functional annotation be present in mgu74av2? I don't have anything listed when I wrote the annotation to an text file. Also mgu74av2SUMFUNC found 1 of 12488 Is this as it should be, or am I missing the information for some reason? Thanks! Rich ------------------------------------------------------------ Richard A. Friedman, PhD Associate Research Scientist Herbert Irving Comprehensive Cancer Center Oncoinformatics Core Lecturer Department of Biomedical Informatics Box 95, Room 130BB or P&S 1-420C Columbia University Medical Center 630 W. 168th St. New York, NY 10032 (212)305-6901 (5-6901) (voice) friedman@cancercenter.columbia.edu http://cancercenter.columbia.edu/~friedman/ "I'm giving up coffee. Now that it looks like I might top 6 feet, I don't want to risk spoiling it." - Isaac Friedman, age 14 -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 1192 bytes Desc: not available Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments /20040601/19ba5c0a/attachment.bin

Hi, Richard, The SUMFUNC environment was obtained from a source data provided by LocusLink (LL_tmpl.gz). We can not annotate genes with SUMFUNC in the annotation data package if the LocusLink data does not provide the annotation. Jianhua >Mime-Version: 1.0 (Apple Message framework v613) >To: "'Bioconductor Mail List'" <bioconductor@stat.math.ethz.ch> >From: Richard Friedman <friedman@cancercenter.columbia.edu> >Date: Tue, 1 Jun 2004 12:35:22 -0400 >X-No-Spam-Score: Local >X-Scanned-By: MIMEDefang 2.40 >Received-SPF: none (hypatia: domain of bioconductor- bounces@stat.math.ethz.ch does not designate permitted sender hosts) >Received-SPF: none (hypatia: domain of friedman@cancercenter.columbia.edu does not designate permitted sender hosts) >X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch >X-Spam-Checker-Version: SpamAssassin 2.63 (2004-01-11) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, hits=-1.1 required=5.0 tests=AWL, HTML_MESSAGE autolearn=no version=2.63 >Subject: [BioC] Missing Functional Annotation in mgu74av2 >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.5 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> > Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084