Problem installing CummeRbund 2.0.0 (BiocGenerics)
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@fluder-eugene-5541
Last seen 8.1 years ago
Hi, CummeRbund 2.0.0 will not build on my system because it claims that the BiocGenerics version is 0.2.0 vice 0.4.0. I installed what I think is the latest BiocGenerics which is externally labeled 0.4.0 . When I check the version with installed.packages() it reports back as 0.2.0. Did I miss something? Gene -- Eugene M Fluder, Jr, PhD Computational Scientist Scientific Computing The Mt. Sinai School of Medicine One Gustave L. Levy Place, Box 1498 New York, NY 10029-6574 T: 212 659 8608 F: 646 537 8660 E: eugene.fluder@mssm.edu [[alternative HTML version deleted]]
BiocGenerics BiocGenerics • 768 views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 19 months ago
United States
Hi Eugene, On Mon, Oct 8, 2012 at 2:01 PM, Fluder, Eugene <eugene.fluder at="" mssm.edu=""> wrote: > Hi, > > CummeRbund 2.0.0 will not build on my system because it claims that the BiocGenerics version is 0.2.0 vice 0.4.0. > I installed what I think is the latest BiocGenerics which is externally labeled 0.4.0 . I'm not sure what you mean by "externally labeled". > When I check the version with installed.packages() it reports back as 0.2.0. > > Did I miss something? > Sounds like you wanted to upgrade to Bioconductor 2.11. These commands should do that for you: source("http://bioconductor.org/biocLite.R") biocLite("BiocUpgrade") After upgrading, you should have BiocGenerics 0.4.0. Dan > Gene > -- Eugene M Fluder, Jr, PhD > Computational Scientist > Scientific Computing > > The Mt. Sinai School of Medicine > One Gustave L. Levy Place, Box 1498 > New York, NY 10029-6574 > > T: 212 659 8608 > F: 646 537 8660 > E: eugene.fluder at mssm.edu > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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