Question: EdgeR: Problem with selection of highest transcript
5.4 years ago by
Guest User • 12k
Guest User • 12k wrote:
Hello, when I use this (from carcinoma vs normal example), I select only the lowest transcript instead of the higest: > o <- order(rowSums(y$counts)) > y <- y[o,] > d <- duplicated(y$genes$Symbol) > y <- y[!d,] > nrow(y) what is wrong ? I am a novice in informatics. and I do not know how to save my list of genes (for example after the carcinoma vs normaltissue example). many thanks, Best regards, anna -- output of sessionInfo(): R version 2.15.1 (2012-06-22) Platform: i386-pc-mingw32/i386 (32-bit) locale:  LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252  LC_MONETARY=French_France.1252 LC_NUMERIC=C  LC_TIME=French_France.1252 attached base packages:  splines stats graphics grDevices utils datasets methods  base other attached packages:  edgeR_3.0.0 limma_3.14.1 -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENT • link •