taqman versions
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marco fabbri ▴ 320
@marco-fabbri-1657
Last seen 6.0 years ago
Italy
I am working with Taqman Microrna and I am using different versions of cards. I am having problems with different version. Applied biosystem uses its own code that refers to specific mirbase version. I wonder if you are aware of a database with relation between mirbase and taqman codes Thank you Marco
microRNA microRNA • 801 views
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James F. Reid ▴ 120
@james-f-reid-2808
Last seen 8.1 years ago
Ciao Marco, On 24/10/12 18:40, Marco Fabbri wrote: > I am working with Taqman Microrna and I am using different versions of cards. > I am having problems with different version. Applied biosystem uses > its own code that refers to specific mirbase version. > I wonder if you are aware of a database with relation between mirbase > and taqman codes I am not aware of such a database, apart from the details provided by AB for manufacturing their cards (they usually state which release of mirbase was used for designing the probes) and cards that have been deposited at NCBI GEO or EBI ArrayExpress. What I tend to do is extract the probe sequences and match them against the latest release of mirbase. HTH. J. > > Thank you > > Marco > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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