I just wanted to check if RNA Seq counts generated using RSEM, are a valid input for edgeR package? -- Maria Dermit Ph.D. Student, Luscombe group EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK [[alternative HTML version deleted]]

Hi Maria, On Thu, Nov 8, 2012 at 9:09 AM, Maria Dermit <mariadermit2011 at="" gmail.com=""> wrote: > I just wanted to check if RNA Seq counts generated using RSEM, are a valid > input for edgeR package? You might be interested in reading through this thread on the mailing list from earlier this week: http://thread.gmane.org/gmane.science.biology.informatics.conductor/44 586 that gmane interface also provides a way to search the list archives, so ... it's a good thing to bookmark. HTH, -steve -- Steve Lianoglou Graduate Student: Computational Systems Biology | Memorial Sloan-Kettering Cancer Center | Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact