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Question: DESeq not available
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5.1 years ago by
Guest User12k
Guest User12k wrote:
I've been trying to install DESeq in R for the past 2 days, and I keep on getting the error that it is not available. I have tried to install both through the package installer and by using the code on your website. Is the website down or have I done something wrong? Thank you -- output of sessionInfo(): > source('http://bioconductor.org/biocLite.R') > biocLite('DESeq') Using R version 2.9.2, biocinstall version 2.4.13. Installing Bioconductor version 2.4 packages: [1] "DESeq" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ???DESeq??? is not available -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENTlink modified 5.1 years ago by Dan Tenenbaum ♦♦ 8.2k • written 5.1 years ago by Guest User12k
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gravatar for Dan Tenenbaum
5.1 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Thu, Nov 15, 2012 at 9:54 AM, Emma [guest] <guest at="" bioconductor.org=""> wrote: > > I've been trying to install DESeq in R for the past 2 days, and I keep on getting the error that it is not available. I have tried to install both through the package installer and by using the code on your website. Is the website down or have I done something wrong? > Thank you > > -- output of sessionInfo(): > >> source('http://bioconductor.org/biocLite.R') >> biocLite('DESeq') > Using R version 2.9.2, biocinstall version 2.4.13. If you look at the package homepage for DESeq: http://bioconductor.org/packages/release/bioc/html/DESeq.html You see that it has only been around since Bioconductor 2.6 (R-2.11). So that's why you can't install it for R 2.9.2. I recommend that you update to the most recently released R, which is R-2.15.2. Dan > Installing Bioconductor version 2.4 packages: > [1] "DESeq" > Please wait... > > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ???DESeq??? is not available > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 5.1 years ago by Dan Tenenbaum ♦♦ 8.2k
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