mzR Error
2
0
Entering edit mode
Guest User ★ 12k
@guest-user-4897
Last seen 7.1 years ago
Dear All, I am getting error for mzR constantly. Please help out. > library(Biobase) > library(BiocGenerics) > library(methods) > library(Rcpp) > library(mzR) Error : .onLoad failed in loadNamespace() for 'mzR', details: call: value[[3L]](cond) error: failed to load module Ramp from package mzR negative length vectors are not allowed Error: package or namespace load failed for ???mzR??? -- output of sessionInfo(): R Under development (unstable) (2012-12-01 r61188) Platform: i386-w64-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] Rcpp_0.10.1 Biobase_2.19.1 BiocGenerics_0.5.1 > -- Sent via the guest posting facility at bioconductor.org.
mzR mzR • 817 views
ADD COMMENT
0
Entering edit mode
@laurent-gatto-5645
Last seen 1 day ago
Belgium
Dear Prasad, New binary packages of mzR, version 1.5.4 (devel) and 1.4.2 (stable), that have been built against Rcpp 0.10.1 are available via biocLite. Could you update as follows library(BiocInstaller) biocLite("mzR") which should fix the problem. Best wishes, Laurent On 6 December 2012 11:21, Prasad Phapale [guest] <guest at="" bioconductor.org=""> wrote: > > Dear All, > I am getting error for mzR constantly. Please help out. >> library(Biobase) >> library(BiocGenerics) >> library(methods) >> library(Rcpp) >> library(mzR) > Error : .onLoad failed in loadNamespace() for 'mzR', details: > call: value[[3L]](cond) > error: failed to load module Ramp from package mzR > negative length vectors are not allowed > > Error: package or namespace load failed for ???mzR??? > > -- output of sessionInfo(): > > > R Under development (unstable) (2012-12-01 r61188) > Platform: i386-w64-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 > [4] LC_NUMERIC=C LC_TIME=English_United States.1252 > > attached base packages: > [1] parallel stats graphics grDevices utils datasets methods base > > other attached packages: > [1] Rcpp_0.10.1 Biobase_2.19.1 BiocGenerics_0.5.1 >> > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Laurent Gatto - http://proteome.sysbiol.cam.ac.uk/lgatto/ Cambridge Centre for Proteomics - http://www.bio.cam.ac.uk/proteomics
ADD COMMENT
0
Entering edit mode
On 6 December 2012 19:56, Laurent Gatto <lg390 at="" cam.ac.uk=""> wrote: > Dear Prasad, > > New binary packages of mzR, version 1.5.4 (devel) and 1.4.2 (stable), > that have been built against Rcpp 0.10.1 are available via biocLite. > Could you update as follows > > library(BiocInstaller) > biocLite("mzR") > > which should fix the problem. According to my local tests, this is fixed with the above mentioned mzR versions. Laurent > Best wishes, > > Laurent > > On 6 December 2012 11:21, Prasad Phapale [guest] <guest at="" bioconductor.org=""> wrote: >> >> Dear All, >> I am getting error for mzR constantly. Please help out. >>> library(Biobase) >>> library(BiocGenerics) >>> library(methods) >>> library(Rcpp) >>> library(mzR) >> Error : .onLoad failed in loadNamespace() for 'mzR', details: >> call: value[[3L]](cond) >> error: failed to load module Ramp from package mzR >> negative length vectors are not allowed >> >> Error: package or namespace load failed for ???mzR??? >> >> -- output of sessionInfo(): >> >> >> R Under development (unstable) (2012-12-01 r61188) >> Platform: i386-w64-mingw32/i386 (32-bit) >> >> locale: >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 >> [4] LC_NUMERIC=C LC_TIME=English_United States.1252 >> >> attached base packages: >> [1] parallel stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] Rcpp_0.10.1 Biobase_2.19.1 BiocGenerics_0.5.1 >>> >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > -- > Laurent Gatto > - http://proteome.sysbiol.cam.ac.uk/lgatto/ > Cambridge Centre for Proteomics > - http://www.bio.cam.ac.uk/proteomics -- Laurent Gatto - http://proteome.sysbiol.cam.ac.uk/lgatto/ Cambridge Centre for Proteomics - http://www.bio.cam.ac.uk/proteomics
ADD REPLY
0
Entering edit mode
@laurent-gatto-5645
Last seen 1 day ago
Belgium
On 7 December 2012 11:10, Prasad Phapale <pphapale at="" gmail.com=""> wrote: > Thanks, > I used new binary packages of mzR, version 1.5.4 (devel) and worked fine > with 32 bit system. But my R is getting crashed. > So, I switched to 64 bit PC and it works. But my 32 bit system still get > crashed for R with this. And is this crashing anyhow related to mzR or any other Bioc package? The tests I have done are on a 32 bit system and I did not experience any such inconvenience. Laurent > Anyway thanks I am working with 64 bit system and its fine. > Thanks a lot. > > > On Fri, Dec 7, 2012 at 3:16 PM, Laurent Gatto <lg390 at="" cam.ac.uk=""> wrote: >> >> On 6 December 2012 19:56, Laurent Gatto <lg390 at="" cam.ac.uk=""> wrote: >> > Dear Prasad, >> > >> > New binary packages of mzR, version 1.5.4 (devel) and 1.4.2 (stable), >> > that have been built against Rcpp 0.10.1 are available via biocLite. >> > Could you update as follows >> > >> > library(BiocInstaller) >> > biocLite("mzR") >> > >> > which should fix the problem. >> >> According to my local tests, this is fixed with the above mentioned >> mzR versions. >> >> Laurent >> >> > Best wishes, >> > >> > Laurent >> > >> > On 6 December 2012 11:21, Prasad Phapale [guest] >> > <guest at="" bioconductor.org=""> wrote: >> >> >> >> Dear All, >> >> I am getting error for mzR constantly. Please help out. >> >>> library(Biobase) >> >>> library(BiocGenerics) >> >>> library(methods) >> >>> library(Rcpp) >> >>> library(mzR) >> >> Error : .onLoad failed in loadNamespace() for 'mzR', details: >> >> call: value[[3L]](cond) >> >> error: failed to load module Ramp from package mzR >> >> negative length vectors are not allowed >> >> >> >> Error: package or namespace load failed for ???mzR??? >> >> >> >> -- output of sessionInfo(): >> >> >> >> >> >> R Under development (unstable) (2012-12-01 r61188) >> >> Platform: i386-w64-mingw32/i386 (32-bit) >> >> >> >> locale: >> >> [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United >> >> States.1252 LC_MONETARY=English_United States.1252 >> >> [4] LC_NUMERIC=C LC_TIME=English_United >> >> States.1252 >> >> >> >> attached base packages: >> >> [1] parallel stats graphics grDevices utils datasets methods >> >> base >> >> >> >> other attached packages: >> >> [1] Rcpp_0.10.1 Biobase_2.19.1 BiocGenerics_0.5.1 >> >>> >> >> >> >> -- >> >> Sent via the guest posting facility at bioconductor.org. >> >> >> >> _______________________________________________ >> >> Bioconductor mailing list >> >> Bioconductor at r-project.org >> >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> >> Search the archives: >> >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > >> >
ADD COMMENT

Login before adding your answer.

Traffic: 251 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6