annotation for Agilent Mouse an d Human 8x60K array
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marco fabbri ▴ 320
@marco-fabbri-1657
Last seen 7.8 years ago
Italy
Dear All, I am looking for annotation for Agilent Mouse an d Human 8x60K array. thank you marco
Annotation Annotation • 2.4k views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 7.9 years ago
United States
Hi Marco, I assume you have looked here: http://www.bioconductor.org/packages/release/BiocViews.html#___Annotat ionData But even though you have not told us much about what you want to do. I suspect that in your case, your platform of interest might not actually be there yet. Also there are two versions of the 8x60K platform (for human alone). Which design were you looking for? Anyways, once you have that information in hand, you probably need to go to Agilent and grab the relevant files so that you can follow the instructions in this vignette here to generate a package: http://www.bioconductor.org/packages/2.11/bioc/vignettes/AnnotationFor ge/inst/doc/SQLForge.pdf Please let me know if you have any trouble, Marc On 02/05/2013 03:14 AM, Marco Fabbri wrote: > Dear All, > I am looking for annotation for Agilent Mouse an d Human 8x60K array. > > thank you > > marco > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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Hi All,

I am not sure if this is the right place to post this question or not. Since my question is also related to Agilent human microarray annotations, I am trying to follow the same thread. Please feel free to delete the post if this is not relevant here. I am trying to find the annotation package for the following chip 

Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381

I have seen the bioconductor annotation packages for Agilent Human microarray and found the following package. hgug4110b.db. I am not sure if this package ic correct or not. May I use this package or do i need to create the annotation db for this particular design using AnnottaionForge. Any suggestions/insights on this are much appreciated. 

 

Thanks,

Prathyusha

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