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Question: Error when installing globaltest package
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gravatar for Shields, Rusty IMS
4.7 years ago by
Shields, Rusty IMS40 wrote:
Hi all, I've run into a problem when attempting to install the globaltest package from Bioconductor. I'm using R 2.14.0 on 64bit SLES 11. Let me know what other information you might need about my system to troubleshoot this. Using the method described for this installation on the Bioconductor website: source("http://bioconductor.org/biocLite.R") biocLite("globaltest") I get and the following result, which I can't find an reference to on the list archives: > biocLite("globaltest") BioC_mirror: 'http://www.bioconductor.org' Using R version 2.14, BiocInstaller version 1.2.1. Installing package(s) 'globaltest' trying URL 'http://www.bioconductor.org/packages/2.9/bioc/src/contrib/ globaltest_5.8.1.tar.gz' Content type 'application/x-gzip' length 956376 bytes (933 Kb) opened URL ================================================== downloaded 933 Kb * installing *source* package âglobaltestâ ... ** R ** data ** inst ** preparing package for lazy loading Warning in .simpleDuplicateClass(def, prev) : A specification for class âdata.frameOrNULLâ Creating a generic function for âsortâ from package âbaseâ in package âglobaltestâ Creating a generic function for âmodel.matrixâ from package âstatsâ in package âglobaltestâ Creating a generic function for âcoefficientsâ from package âstatsâ in package âglobaltestâ Creating a generic function for âfitted.valuesâ from package âstatsâ in package âglobaltestâ Creating a generic function for âresidualsâ from package âstatsâ in package âglobaltestâ Error in setMethod("combine", signature(x = "gt.result", y = "gt.result"), : no existing definition for function âcombineâ Error : unable to load R code in package âglobaltestâ ERROR: lazy loading failed for package âglobaltestâ * removing â/usr/local/R-2.14.0/lib64/R/library/globaltestâ The downloaded packages are in â/tmp/RtmpdCwjNB/downloaded_packagesâ Updating HTML index of packages in '.Library' Making packages.html ... done Old packages: 'caret' Update all/some/none? [a/s/n]: ________________________________ Information in this e-mail may be confidential. It is intended only for the addressee(s) identified above. If you are not the addressee(s), or an employee or agent of the addressee(s), please note that any dissemination, distribution, or copying of this communication is strictly prohibited. If you have received this e-mail in error, please notify the sender of the error. [[alternative HTML version deleted]]
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