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Dear all,
The new pathview package will be formally released with the
new Bioconductor 2.12 soon.
The pathview R package is a tool set for pathway based data
integration and visualization. It maps, integrates and renders a
variety of user
data on relevant pathway graphs. Although built as a stand-alone
program,
pathview may seamlessly integrate with pathway (and functional)
analysis tools
for a large-scale and fully automated analysis pipeline.
?
The current Bioconductor page is
http://bioconductor.org/packages/2.12/bioc/html/pathview.html.
Note that you need to update your R/Bioconductor for biocLite
installation.
You may find an overview and some example graphics here:
http://pathview.r-forge.r-project.org/.
Please try it out and let me know if you have any
comments/suggestions. Thank you!
Weijun Luo