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Question: gmapR for R 3.0.0 installation problem?
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gravatar for Dan Tenenbaum
4.6 years ago by
Dan Tenenbaum ♦♦ 8.2k
United States
Dan Tenenbaum ♦♦ 8.2k wrote:
On Wed, Apr 3, 2013 at 4:39 PM, ying chen <ying_chen at="" live.com=""> wrote: > > Hi guys, I tried to install gmapR in R3.0.0 in windows 7, but kept having troubles: > biocLite("gmapR") > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.12 (BiocInstaller 1.9.11), R version 3.0.0. > Installing package(s) 'gmapR' package ?gmapR? is available as a source package but not as a binaryWarning message: > package ?gmapR? is not available (for R version 3.0.0) > >> biocLite("gmapR",type="source") > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.12 (BiocInstaller 1.9.11), R version 3.0.0. > Installing package(s) 'gmapR' > trying URL 'http://bioconductor.org/packages/2.12/bioc/src/contrib/g mapR_1.1.16.tar.gz' > Content type 'application/x-gzip' length 4473453 bytes (4.3 Mb) > opened URL > downloaded 4.3 Mb* installing *source* package 'gmapR' ... > ** libs*** arch - i386 > ERROR: compilation failed for package 'gmapR' > * removing 'C:/Program Files/R/R-3.0.0/library/gmapR'The downloaded source packages are in > ?C:\Users\Administrator\AppData\Local\Temp\Rtmp2nMJFF\downlo aded_packages? > Warning messages: > 1: running command '"C:/PROGRA~1/R/R-30~1.0/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.0.0\library" C:\Users\ADMINI~1\AppData\Loca l\Temp\Rtmp2nMJFF/downloaded_packages/gmapR_1.1.16.tar.gz' had status 1 > 2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package ?gmapR? had non-zero exit status >> >> install.packages("gmapR_1.1.16.tar.gz",repos=NULL,type="source") > * installing *source* package 'gmapR' ... > ** libs*** arch - i386 > ERROR: compilation failed for package 'gmapR' > * removing 'C:/Program Files/R/R-3.0.0/library/gmapR' > Warning messages: > 1: running command '"C:/PROGRA~1/R/R-30~1.0/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.0.0\library" "gmapR_1.1.16.tar.gz"' had status 1 > 2: In install.packages("gmapR_1.1.16.tar.gz", repos = NULL, type = "source") : > installation of package ?gmapR_1.1.16.tar.gz? had non-zero exit status > Does gmapR work in windows? Thanks, Ying Unfortunately, no gmapR is not supported on Windows. Dan > sessionInfo() > R version 3.0.0 (2013-04-03) > Platform: x86_64-w64-mingw32/x64 (64-bit)locale: > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 attached base packages: > [1] stats graphics grDevices utils datasets methods base other attached packages: > [1] BiocInstaller_1.9.11loaded via a namespace (and not attached): > [1] tools_3.0.0 >> > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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