Dear all, I received this file produced by an illumina gene expression study and I want to import into R/bioconductor Any suggestion? Thank you Marco [Header] GSGX Version 1.9.0 Report Date 12/3/2012 11:52 Project HumanSamplesonMouse Group Set dataset Analysis dataset_rank_invariant_nobkgd Normalization rank invariant [Group Probe Profile] TargetID ProbeID MO 2006 1.AVG_Signal MO 2006 1.Detection Pval MO 2006 2.AVG_Signal SPECIES SOURCE SEARCH_KEY TRANSCRIPT ILMN_GENE SOURCE_REFERENCE_ID REFSEQ_ID UNIGENE_ID ENTREZ_GENE_ID GI ACCESSION SYMBOL PROTEIN_PRODUCT PROBE_ID ARRAY_ADDRESS_ID PROBE_TYPE PROBE_START PROBE_SEQUENCE CHROMOSOME PROBE_CHR_ORIENTATION PROBE_COORDINATES CYTOBAND DEFINITION SYNONYMS OBSOLETE_PROBE_ID 0610006I08RIK 1940731 291.4 0.33459 1419.4 0 1477.1 0 1334.5 0 1241 0 1250.6

On Thu, Apr 4, 2013 at 5:58 AM, Marco Fabbri <fabbri.marco at="" gmail.com=""> wrote: > Dear all, > > I received this file produced by an illumina gene expression study and > I want to import into R/bioconductor > > Any suggestion? Hi, Marco. Take a look at the lumi package and the read.ilmn function in limma. Sean > Thank you > > Marco > > [Header] > GSGX Version 1.9.0 > Report Date 12/3/2012 11:52 > Project HumanSamplesonMouse > Group Set dataset > Analysis dataset_rank_invariant_nobkgd > Normalization rank invariant > [Group Probe Profile] > TargetID ProbeID MO 2006 1.AVG_Signal MO 2006 1.Detection Pval MO 2006 > 2.AVG_Signal SPECIES SOURCE SEARCH_KEY TRANSCRIPT ILMN_GENE SOURCE_REFERENCE_ID REFSEQ_ID UNIGENE_ID ENTREZ_GENE_ID GI ACCESSION SYMBOL PROTEIN_PRODUCT PROBE_ID ARRAY_ADDRESS_ID PROBE_TYPE PROBE_START PROBE_SEQUENCE CHROMOSOME PROBE_CHR_ORIENTATION PROBE_COORDINATES CYTOBAND DEFINITION SYNONYMS OBSOLETE_PROBE_ID > 0610006I08RIK 1940731 291.4 0.33459 1419.4 0 1477.1 0 1334.5 0 1241 0 1250.6 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor