Question: Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
6.7 years ago by
Peter Langfelder • 2.3k
Peter Langfelder • 2.3k wrote:
Following up on the topic of failed loading/attaching of Bioconductor packages under R-3.0.0 on Mac OS - is this a known bug of the GUI, or a problem with the way Bioconductor compiles packages? The user who experienced problems loading impute did not have problems loading CRAN packages. Should the developers be notified, or do they already know about the problem? Thanks, Peter On Wed, Apr 10, 2013 at 3:29 PM, Dan Tenenbaum <dtenenba at="" fhcrc.org=""> wrote: > On Wed, Apr 10, 2013 at 3:08 PM, Stephanie M. Gogarten > <sdmorris at="" u.washington.edu=""> wrote: >> Is the error occurring just in the R GUI, or in any R session? I'm having a >> similar problem with DNAcopy when I try to load in the R GUI, but it works >> fine in the terminal or in Emacs. >> > > I have the same results; I get the error in the GUI but not in the > command line. So I have two workarounds: > > 1) Use the command line version of R for the time being; and > 2) Start the GUI R like this: > > Open Terminal.app (in /Applications/Utilities) > > then paste the following: > export DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/R.framework/Re sources/lib > open /Applications/R.app > > Then loading the impute package should work. I need to get back to you > with a better solution. > > Dan
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