Error loading customCDFs for Bioconductor
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Max Diehn ▴ 10
@max-diehn-5900
Last seen 9.6 years ago
Hi, I recently upgraded to R v3.0 and Bioconductor v2.12 and am having problems installing customCDFs. I downloaded the "cdf" and "db" files (v16) from the brainarray website (http://brainarray.mbni.med.umich.edu/Brainarray /Database/CustomCDF/CDF_download.asp) and then used "R CMD INSTALL ..." in terminal to try to install the files. This worked fine for the "cdf" files I tried but for the "db" files I get the error below. I'm running R on OS X 10.8.3. Any advice would be greatly appreciated! Thanks, Max -------------- C02K534GFFT0:Project max$ R CMD INSTALL mouse4302mmrefseq.db_16.0.0.tar.gz * installing to library ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library’ * installing *source* package ‘mouse4302mmrefseq.db’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error : .onLoad failed in loadNamespace() for 'mouse4302mmrefseq.db', details: call: sqliteExecStatement(con, statement, bind.data) error: RS-DBI driver: (error in statement: no such table: chrlengths) Error: loading failed Execution halted ERROR: loading failed * removing ‘/Library/Frameworks/R.framework/Versions/3.0/Resources/library/mouse4 302mmrefseq.db’ [[alternative HTML version deleted]]
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