Doubt RCytoscape
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Ricardo Silva ▴ 110
@ricardo-silva-5055
Last seen 9.6 years ago
I'm exporting graph from R to cytoscape, and then importing attribute tables. In my problem each node has a set of attributes, but this attributes will be ideally displayed as in http://labpib.fmrp.usp.br/~rsilva/fabien/rattus.html 304.239771238418 w hydroxy testosterone 6 beta hydroxy testosterone epiandrosterone where each node (a mass) maps to various compounds. If I repeat the node id for all lines of attributes cytoscape picks only the last, is there a way to display all repeated attribute lines for the same node? Ricardo [[alternative HTML version deleted]]
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Paul Shannon ▴ 750
@paul-shannon-5161
Last seen 9.6 years ago
Hi Ricardo, RCytoscape does not yet support anything but scalar node and edge attributes. But Cytoscape allows you to import attributes which are lists, as described here: http://wiki.cytoscape.org/Cytoscape_User_Manual/Attributes Will this solve your problem? - Paul > I'm exporting graph from R to cytoscape, and then importing attribute > tables. In my problem each node has a set of attributes, but this > attributes will be ideally displayed as in > > http://labpib.fmrp.usp.br/~rsilva/fabien/rattus.html > > 304.239771238418 w hydroxy testosterone > 6 beta hydroxy testosterone > epiandrosterone > > > where each node (a mass) maps to various compounds. If I repeat the node id > for all lines of attributes cytoscape picks only the last, is there a way > to display all repeated attribute lines for the same node? > > Ricardo >
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