Migrating a Large BSgenome Package to R 3.0
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Dario Strbenac ★ 1.5k
@dario-strbenac-5916
Last seen 1 day ago
Australia
Is there a way to move BSgenome.Hsapiens.UCSC.hg19 from an R 2.15 library to an R 3.0 library without downloading it all again ? I installed it as a Windows binary. -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia
BSgenome BSgenome BSgenome BSgenome • 1.0k views
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Charles Berry ▴ 290
@charles-berry-5754
Last seen 5.0 years ago
United States
Dario Strbenac <dstr7320 at="" ...=""> writes: > > Is there a way to move BSgenome.Hsapiens.UCSC.hg19 from an R 2.15 library to an R 3.0 library without > downloading it all again ? I installed it as a Windows binary. > Maybe http://article.gmane.org/gmane.comp.lang.r.devel/33286 will help? If so, I would like to hear about your success as I am sometimes stuck behind a low bandwidth connection. HTH,
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It works. I just had to make sure I loaded the R 3.0 version of BSgenome first. > library(BSgenome) > library(BSgenome.Hsapiens.UCSC.hg19, lib.loc="C:\\Program Files\\R\\R-2.15.1\\library")
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@herve-pages-1542
Last seen 9 hours ago
Seattle, WA, United States
Hi Dario, On 05/02/2013 12:00 AM, Dario Strbenac wrote: > Is there a way to move BSgenome.Hsapiens.UCSC.hg19 from an R 2.15 library to an R 3.0 library without downloading it all again ? I installed it as a Windows binary. I would try to copy it and see how it goes. Cheers, H. > > -------------------------------------- > Dario Strbenac > PhD Student > University of Sydney > Camperdown NSW 2050 > Australia > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
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