Hi, I have 18 samples (2 Normal, 16 Cancer data sets) obtained using Agilent DNA Methylation Microarrays. The data sets are obtained in .txt format from Aglilent Feature Extraction software. I want to find the differentially methylated regions/genes in the sample data. The packages in Bioconductor support data from Illumina Methylation. How should I proceed with the work?? I also need to perform pathway analysis and clustering differentially methylated miRNAs. Hope for a positive reply. -- output of sessionInfo(): None -- Sent via the guest posting facility at bioconductor.org.