About Quality Control using affyPLM package
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@chittabrata-mal-3798
Last seen 9.6 years ago
Dear List, During RLE and NUSE plot analysis I obtained numerical summaries based on these plots, like                      20A          20B            10A             10Bmedian 0.002359773 -0.007542337    0.003051789     0.001902185IQR    0.092560253  0.089580148    0.076335304     0.093406833 What will be the criteria to remove an array for further downstream analysis by inspecting these values? More specifically, what cut-off criteria I should set to eliminate a faulty array? With regards. [[alternative HTML version deleted]]
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Entering edit mode
@chittabrata-mal-3798
Last seen 9.6 years ago
Dear List, During RLE and NUSE plot analysis I obtained numerical summaries based on these plots, like 20A 20B 10A 20B median 0.002359773 -0.007542337 0.003051789 0.001902185 IQR 0.092560253 0.089580148 0.076335304 0.093406833 What will be the criteria to remove an array for further downstream analysis by inspecting these values? More specifically, what cut-off criteria I should set to eliminate a faulty array? With regards. [[alternative HTML version deleted]]
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