Question: Re:limma
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gravatar for daniela.marconi@libero.it
15.3 years ago by
Hi I'm using limma for an affymetrix dataset. For summarize which is the most relavant differential expressed genes I use classifyTestsF() and I extract up-regulated and down-regulated genes. At the same time i look at the results of the fit with topTable() (sorted by B). But the genes are different. Is it possible? Why? Is B (probability log odds) a god estimator? What is the better solution, to summarize my results, between B and F-statistics? Thanks Daniela Marconi
limma • 401 views
ADD COMMENTlink written 15.3 years ago by daniela.marconi@libero.it100
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