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Question: Failure to update to Bioconductor 2.12 from bioconductor 2.11
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4.5 years ago by
Guest User12k
Guest User12k wrote:
Bioconductor does not update itself form 2.11 to 2.12 although I am using the latest R version of 3.0.1. Please help... Thanks in advance. D. -- output of sessionInfo(): > source("http://bioconductor.org/biocLite.R") Your Bioconductor is out-of-date, upgrade to version 2.12 by following instructions at http://bioconductor.org/install. Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help > biocLite() BioC_mirror: http://bioconductor.org Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15. Installing package(s) 'Biobase' 'IRanges' 'AnnotationDbi' Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15 trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/con trib/2.15/Biobase_2.18.0.zip' Content type 'application/zip' length 2346708 bytes (2.2 Mb) opened URL downloaded 2.2 Mb trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/con trib/2.15/IRanges_1.16.6.zip' Content type 'application/zip' length 2048190 bytes (2.0 Mb) opened URL downloaded 2.0 Mb trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/con trib/2.15/AnnotationDbi_1.20.7.zip' Content type 'application/zip' length 4200978 bytes (4.0 Mb) opened URL downloaded 4.0 Mb package ???Biobase??? successfully unpacked and MD5 sums checked package ???IRanges??? successfully unpacked and MD5 sums checked package ???AnnotationDbi??? successfully unpacked and MD5 sums checked -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENTlink modified 4.5 years ago by James W. MacDonald45k • written 4.5 years ago by Guest User12k
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4.5 years ago by
United States
James W. MacDonald45k wrote:
Hi Debatosh, On 8/5/2013 4:50 AM, Debatosh Das [guest] wrote: > Bioconductor does not update itself form 2.11 to 2.12 although I am using the latest R version of 3.0.1. > Please help... > Thanks in advance. > D. > > > -- output of sessionInfo(): > >> source("http://bioconductor.org/biocLite.R") > Your Bioconductor is out-of-date, upgrade to version 2.12 by following instructions at > http://bioconductor.org/install. > Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help >> biocLite() > BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15. This line ^^^^^^^^^^^^^ says you are using R-2.15, not R-3.0.1 Best, Jim > Installing package(s) 'Biobase' 'IRanges' 'AnnotationDbi' > Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.15 > trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/c ontrib/2.15/Biobase_2.18.0.zip' > Content type 'application/zip' length 2346708 bytes (2.2 Mb) > opened URL > downloaded 2.2 Mb > > trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/c ontrib/2.15/IRanges_1.16.6.zip' > Content type 'application/zip' length 2048190 bytes (2.0 Mb) > opened URL > downloaded 2.0 Mb > > trying URL 'http://bioconductor.org/packages/2.11/bioc/bin/windows/c ontrib/2.15/AnnotationDbi_1.20.7.zip' > Content type 'application/zip' length 4200978 bytes (4.0 Mb) > opened URL > downloaded 4.0 Mb > > package ???Biobase??? successfully unpacked and MD5 sums checked > package ???IRanges??? successfully unpacked and MD5 sums checked > package ???AnnotationDbi??? successfully unpacked and MD5 sums checked > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
ADD COMMENTlink written 4.5 years ago by James W. MacDonald45k
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