Entering edit mode
Miles Pufall
▴
40
@miles-pufall-5910
Last seen 10.1 years ago
Hi Michael -
I know this is an old thread, but I am still unable to use BigWig
files from my ChIPseq data using Gviz on a Mac. When I run it on a
linux box everything runs perfectly. Should I still be having this
problem, or have I missed a fix along the way. Here are my
sessionInfo() and error. Thanks, and, as always, happy to share any
files you'd like.
M
*****************(sessionInfo)
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] parallel grid stats graphics grDevices utils
datasets methods base
other attached packages:
[1] GenomicFeatures_1.13.46 AnnotationDbi_1.23.27 Biobase_2.21.7
GenomicRanges_1.13.51 XVector_0.1.4 IRanges_1.19.38
[7] BiocGenerics_0.7.5 Gviz_1.5.15
loaded via a namespace (and not attached):
[1] biomaRt_2.17.3 Biostrings_2.29.19 biovizBase_1.9.4
bitops_1.0-6 BSgenome_1.29.1 cluster_1.14.4
colorspace_1.2-3
[8] DBI_0.2-7 dichromat_2.0-0 Hmisc_3.12-2
labeling_0.2 lattice_0.20-23 latticeExtra_0.6-26
munsell_0.4.2
[15] plyr_1.8 RColorBrewer_1.0-5 RCurl_1.95-4.1
rpart_4.1-3 Rsamtools_1.13.47 RSQLite_0.11.4
rtracklayer_1.21.12
[22] scales_0.2.3 stats4_3.0.2 stringr_0.6.2
tools_3.0.2 XML_3.98-1.1 zlibbioc_1.7.0
*****************(error)
library("Gviz")
Loading required package: grid
library(GenomicFeatures)
setwd("/Volumes/Pufall_BD1/ChIPseq/Nalm6/GR/")
itrack <- IdeogramTrack(genome = "hg19", cex = 1)
gtrack <- GenomeAxisTrack(cex=1)
tris_1p<-DataTrack("nalm6_1p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="1% Tris", ylim=c(0,1.5))
tris_05p<-DataTrack("nalm6_05p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="0.5% Tris", ylim=c(0,1.5))
less_Ab<-DataTrack("nalm6_6ugn499_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Less Ab", ylim=c(0,1.5))
standard<-DataTrack("nalm6_05_gly_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Standard", ylim=c(0,1.5))
nalm6_nodex<-D> library(GenomicFeatures)
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: BiocGenerics
The following objects are masked from package:parallel:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from package:stats:
xtabs
The following objects are masked from package:base:
anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
duplicated, eval, Filter, Find, get, intersect, lapply, Map,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
Position, rank, rbind, Reduce, rep.int, rownames, sapply, setdiff,
sort, table, tapply, union, unique, unlist
Loading required package: IRanges
Loading required package: GenomicRanges
setwd("/Volumes/Pufall_BD1/ChIPseq/Nalm6/GR/")
itrack <- IdeogramTrack(genome = "hg19", cex = 1)
gtrack <- GenomeAxisTrack(cex=1)
tris_1p<-DataTrack("nalm6_1p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="1% Tris", ylim=c(0,1.5))
tris_05p<-DataTrack("nalm6_05p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="0.5% Tris", ylim=c(0,1.5))
less_Ab<-DataTrack("nalm6_6ugn499_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Less Ab", ylim=c(0,1.5))
standard<-DataTrack("nalm6_05_gly_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Standard", ylim=c(0,1.5))
nalm6_nodex<-DataTrack("nalnalm6_nly_conLoading required package:
XVector
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
> setwd("/Volumes/Pufall_BD1/ChIPseq/Nalm6/GR/")
> itrack <- IdeogramTrack(genome = "hg19", cex = 1)
gtrack <- GenomeAxisTrack(cex=1)
tris_1p<-DataTrack("nalm6_1p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="1% Tris", ylim=c(0,1.5))
tris_05p<-DataTrack("nalm6_05p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="0.5% Tris", ylim=c(0,1.5))
less_Ab<-DataTrack("nalm6_6ugn499_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Less Ab", ylim=c(0,1.5))
standard<-DataTrack("nalm6_05_gly_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Standard", ylim=c(0,1.5))
nalm6_nodex<-DataTrack("nalnalm6_nly_control_lambda.bw",genome="hg19",
cex.title=0.95, background.title="darkgreen",
> gtrack <- GenomeAxisTrack(cex=1)
>
> tris_1p<-DataTrack("nalm6_1p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
+ col.histogram="blue", fill.histogram
="blue",name ="1% Tris", ylim=c(0,1.5))
> tris_05p<-DataTrack("nalm6_05p_tris_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="0.5% Tris", ylim=c(0,1.5))
less_Ab<-DataTrack("nalm6_6ugn499_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Less Ab", ylim=c(0,1.5))
standard<-DataTrack("nalm6_05_gly_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
col.histogram="blue", fill.histogram ="blue",name
="Standard", ylim=c(0,1.5))
nalm6_nodex<-DataTrack("nalnalm6_nly_control_lambda.bw",genome="hg19",
cex.title=0.95, background.title="darkgreen",
col.histogram="darkgreen", fill.histogram
="darkgreen",name ="No Drug", ylim=c(0,1.5),background.panel =
"lightyellow")
bcl6.gr<-GeneRegionTrack("bcl6.gtf",name="BCL6",stacking="squish",stac
kHeight = 0.2,
geneSymbols=TRUE, showId = TRUE, cex=1,
cex.title=1.2, background.title="darkgray")
plotTracks(list(itrack,gtrack,bcl6.gr, t+
col.histogram="blue", fill.histogram ="blue",name ="0.5% Tris",
ylim=c(0,1.5))
> less_Ab<-DataTrack("nalm6_6ugn499_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
+ col.histogram="blue", fill.histogram
="blue",name ="Less Ab", ylim=c(0,1.5))
> standard<-DataTrack("nalm6_05_gly_treat_pileup.bw",genome="hg19",
cex.title=0.95, background.title="darkgray",
+ col.histogram="blue", fill.histogram
="blue",name ="Standard", ylim=c(0,1.5))
>
nalm6_nodex<-DataTrack("nalnalm6_nly_control_lambda.bw",genome="hg19",
cex.title=0.95, background.title="darkgreen",
+ col.histogram="darkgreen", fill.histogram
="darkgreen",name ="No Drug", ylim=c(0,1.5),background.panel =
"lightyellow")
bcl6.gr<-GeneRegionTrack("bcl6.gtf",name="BCL6",stacking="squish",stac
kHeight = 0.2,
geneSymbols=TRUE, showId = TRUE, cex=1,
cex.title=1.2, background.title="darkgray")
plotTracks(list(itrack,gtrack,bcl6.gr, tris_1p,
tris_05p,less_Ab,standard,nalm6_nodex),from=187437000,
to=187470000,type="histogram",chromosome="chr3")Error in
validObject(.Object) :
invalid class ReferenceDataTrack object: The referenced file
'nalnalm6_nly_control_lambda.bw' does not exist
>
> bcl6.gr<-GeneRegionTrack("bcl6.gtf",name="BCL6",stacking="squish",st
ackHeight = 0.2,
+ geneSymbols=TRUE, showId = TRUE, cex=1,
cex.title=1.2, background.title="darkgray")
>
>
nalm6_nodex<-DataTrack("nalm6_05_gly_control_lambda.bw",genome="hg19",
cex.title=0.95, background.title="darkgreen",
+ col.histogram="darkgreen", fill.histogram
="darkgreen",name ="No Drug", ylim=c(0,1.5),background.panel =
"lightyellow")
>
> bcl6.gr<-GeneRegionTrack("bcl6.gtf",name="BCL6",stacking="squish",st
ackHeight = 0.2,
+ geneSymbols=TRUE, showId = TRUE, cex=1,
cex.title=1.2, background.title="darkgray")
> plotTracks(list(itrack,gtrack,bcl6.gr, tris_1p,
tris_05p,less_Ab,standard,nalm6_nodex),from=187437000,
to=187470000,type="histogram",chromosome="chr3")
Abort trap: 6
bash-3.2$
****************************
On May 1, 2013, at 3:58 PM, Michael Lawrence
<lawrence.michael@gene.com> wrote:
> Thanks for this. I just want to let you know that I am planning on
looking into this. But I'll need to find a Mac, get gdb setup on it,
etc. My guess is the error is inside Jim Kent's library, so it might
be a pain to fix.
>
> Michael
>
>
> On Mon, Apr 29, 2013 at 5:58 AM, Robert Ivanek
<robert.ivanek@unibas.ch> wrote:
> Dear Miles,
>
> Thanks for making the BigWigFile available.
>
> I can reproduce the error on my MAC (using devel version) and I can
also
> confirm that it works on my linux system (using both release and
devel).
> I think that the error is coming from rtraklayer import function,
which
> is used by Gviz to import the BigWigFile.
>
> I am sending this email to the BioC list and another one to the
Michael
> Lawrence (rtraklayer maintainer) together with the link you
provided.
>
> Best
> Robert
>
> ## ---------------------------------------------------------------
> ## MAC
>
> library(Gviz)
> gtrack <- GenomeAxisTrack()
> b1_dex <- DataTrack("~/nalm6_dex.bw", strand="+",genome ="hg19");
> names(b1_dex)<-"Fkbp5";
> plotTracks(list(gtrack, b1_dex), from = 35540000, to = 35698000,
> type="histogram", chromosome="chr6")
>
> Abort trap: 6
>
> sessionInfo()
>
> ## R Under development (unstable) (2013-04-17 r62600)
> ## Platform: x86_64-apple-darwin12.3.0/x86_64 (64-bit)
>
> ## locale:
> ## [1] C/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
>
> ## attached base packages:
> ## [1] grid stats graphics grDevices utils datasets
> methods base
>
> ## other attached packages:
> ## [1] Gviz_1.5.1
>
> ## loaded via a namespace (and not attached):
> ## [1] AnnotationDbi_1.23.4 BSgenome_1.29.0 Biobase_2.21.0
> BiocGenerics_0.7.2 Biostrings_2.29.1
> ## [6] DBI_0.2-6 GenomicFeatures_1.13.1
> GenomicRanges_1.13.7 Hmisc_3.10-1 IRanges_1.19.3
> ## [11] RColorBrewer_1.0-5 RCurl_1.95-4.1 RSQLite_0.11.3
> Rsamtools_1.13.5 XML_3.96-1.1
> ## [16] biomaRt_2.17.0 biovizBase_1.9.1 bitops_1.0-5
> cluster_1.14.4 colorspace_1.2-2
> ## [21] compiler_3.1.0 dichromat_2.0-0 labeling_0.1
> lattice_0.20-15 munsell_0.4
> ## [26] parallel_3.1.0 plyr_1.8
rtracklayer_1.21.3
> scales_0.2.3 stats4_3.1.0
> ## [31] stringr_0.6.2 tools_3.1.0 zlibbioc_1.7.0
>
> library(rtracklayer)
> sessionInfo()
> ## R Under development (unstable) (2013-04-17 r62600)
> ## Platform: x86_64-apple-darwin12.3.0/x86_64 (64-bit)
>
> ## locale:
> ## [1] C/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
>
> ## attached base packages:
> ## [1] parallel stats graphics grDevices utils datasets
> methods base
>
> ## other attached packages:
> ## [1] rtracklayer_1.21.3 GenomicRanges_1.13.7 IRanges_1.19.3
> BiocGenerics_0.7.2
>
> ## loaded via a namespace (and not attached):
> ## [1] BSgenome_1.29.0 Biostrings_2.29.1 RCurl_1.95-4.1
> Rsamtools_1.13.5 XML_3.96-1.1 bitops_1.0-5
> ## [7] stats4_3.1.0 tools_3.1.0 zlibbioc_1.7.0
>
> import.bw("nalm6_dex.bw", GRanges("chr6", IRanges(start=35540000,
> end=35698000), strand="+"))
>
> Abort trap: 6
>
>
>
> ## ---------------------------------------------------------------
>
> ## ---------------------------------------------------------------
> ## LINUX
>
> ## R version 3.0.0 Patched (2013-04-08 r62518)
> ## Platform: x86_64-unknown-linux-gnu (64-bit)
>
> ## locale:
> ## [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
> LC_TIME=en_GB.UTF-8
> ## [4] LC_COLLATE=C LC_MONETARY=en_US.utf8
> LC_MESSAGES=en_US.utf8
> ## [7] LC_PAPER=C LC_NAME=C
LC_ADDRESS=C
> ## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8
> LC_IDENTIFICATION=C
>
> ## attached base packages:
> ## [1] grid stats graphics grDevices utils datasets
> methods base
>
> ## other attached packages:
> ## [1] Gviz_1.4.1
>
> ## loaded via a namespace (and not attached):
> ## [1] AnnotationDbi_1.22.3 BSgenome_1.28.0 Biobase_2.20.0
> BiocGenerics_0.6.0
> ## [5] Biostrings_2.28.0 DBI_0.2-6
> GenomicFeatures_1.12.1 GenomicRanges_1.13.0
> ## [9] Hmisc_3.10-1 IRanges_1.18.0
RColorBrewer_1.0-5
> RCurl_1.95-4.1
> ## [13] RSQLite_0.11.3 Rsamtools_1.12.2 XML_3.96-1.1
> biomaRt_2.16.0
> ## [17] biovizBase_1.8.0 bitops_1.0-5 cluster_1.14.4
> colorspace_1.2-2
> ## [21] compiler_3.0.0 dichromat_2.0-0 labeling_0.1
> lattice_0.20-15
> ## [25] munsell_0.4 parallel_3.0.0 plyr_1.8
> rtracklayer_1.20.1
> ## [29] scales_0.2.3 stats4_3.0.0 stringr_0.6.2
> tools_3.0.0
> ## [33] zlibbioc_1.6.0
>
>
>
> ## R Under development (unstable) (2013-04-08 r62518)
> ## Platform: x86_64-unknown-linux-gnu (64-bit)
>
> ## locale:
> ## [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
> LC_TIME=en_GB.UTF-8
> ## [4] LC_COLLATE=C LC_MONETARY=en_US.utf8
> LC_MESSAGES=en_US.utf8
> ## [7] LC_PAPER=C LC_NAME=C
LC_ADDRESS=C
> ## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8
> LC_IDENTIFICATION=C
>
> ## attached base packages:
> ## [1] grid stats graphics grDevices utils datasets
> methods base
>
> ## other attached packages:
> ## [1] Gviz_1.5.1
>
> ## loaded via a namespace (and not attached):
> ## [1] AnnotationDbi_1.23.4 BSgenome_1.29.0 Biobase_2.21.0
> BiocGenerics_0.7.2
> ## [5] Biostrings_2.29.1 DBI_0.2-6
> GenomicFeatures_1.13.1 GenomicRanges_1.13.7
> ## [9] Hmisc_3.10-1 IRanges_1.19.3
RColorBrewer_1.0-5
> RCurl_1.95-4.1
> ## [13] RSQLite_0.11.3 Rsamtools_1.13.5 XML_3.96-1.1
> biomaRt_2.17.0
> ## [17] biovizBase_1.9.1 bitops_1.0-5 cluster_1.14.4
> colorspace_1.2-2
> ## [21] dichromat_2.0-0 labeling_0.1
lattice_0.20-15
> munsell_0.4
> ## [25] parallel_3.1.0 plyr_1.8
rtracklayer_1.21.3
> scales_0.2.3
> ## [29] stats4_3.1.0 stringr_0.6.2 tools_3.1.0
> zlibbioc_1.7.0
>
>
> On 26/04/13 21:31, Miles Pufall wrote:
> > Sure - I'm not sure of the protocol, so I'm sending this large
file by replying to you directly. Just to re-emphasize, I was able to
work with this file on my Linux box, but not on my mac (rMBP, 16Gb
memory). You can grab it from my dropbox here:
> >
> >
> > Let me know if you need anything else.
> >
> > Miles
> >
> > Miles Pufall, PhD
> > Assistant Professor, Department of Biochemistry
> > University of Iowa
> > 51 Newton Rd., BSB 4-430
> > Iowa City, IA 52242
> > Office: 319-384-1820
> > Email: miles-pufall@uiowa.edu
> >
> >
> > On Apr 26, 2013, at 8:00 AM, Robert Ivanek
<robert.ivanek@unibas.ch>
> > wrote:
> >
> >> Dear Dweebis,
> >>
> >> Thanks for reporting this issue. The first one is fixed, there
was a bug
> >> in "chromosome<-" method . Fixed versions 1.4.1 (2.12 branch) and
1.5.1
> >> (devel) should be available in 24 hours.
> >>
> >> Regarding the crash with BigWig file, would you mind to share it?
> >>
> >> Best
> >> Robert
> >>
> >> On 26 Apr 2013, at 06:49, "Dweebis [guest]"
<guest@bioconductor.org> wrote:
> >>
> >>>
> >>> I'm trying to use Gviz to make figures displaying some ChIPseq
data. I'd converted it to bigWig files to display in a genome browser
and to store more easily. When I use Gviz on a Linux workstation, it
seems to go smoothly, but when I use my MacBook Pro I have a few
problems. The first is running some code from the vignette, which
gives me the following error:
> >>>> library(Gviz)
> >>> Loading required package: grid
> >>>> ideoTrack <- IdeogramTrack(genome = "hg19", chromosome =
"chrX")
> >>>> plotTracks(ideoTrack, from = 85000000, to = 129000000)
> >>> Error in .normargSeqnames(seqnames) :
> >>> supplied 'seqnames' cannot contain NAs or empty strings ("")
> >>>
> >>> The second is when I try to plot from my bigWig files:
> >>>> library("Gviz")
> >>> Loading required package: grid
> >>>> library(GenomicRanges)
> >>> Loading required package: BiocGenerics
> >>> Loading required package: parallel
> >>>
> >>> Attaching package: â?~BiocGenericsâ?T
> >>>
> >>> The following objects are masked from â?~package:parallelâ?T:
> >>>
> >>> clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport,
> >>> clusterMap, parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply,
> >>> parSapplyLB
> >>>
> >>> The following object is masked from â?~package:statsâ?T:
> >>>
> >>> xtabs
> >>>
> >>> The following objects are masked from â?~package:baseâ?T:
> >>>
> >>> anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval,
Filter, Find,
> >>> get, intersect, lapply, Map, mapply, match, mget, order, paste,
pmax, pmax.int,
> >>> pmin, pmin.int, Position, rank, rbind, Reduce, rep.int,
rownames, sapply,
> >>> setdiff, sort, table, tapply, union, unique, unlist
> >>>
> >>> Loading required package: IRanges
> >>>> setwd("~/Desktop/B1_ChIPseq")
> >>>> gtrack <- GenomeAxisTrack()
> >>>> b1_dex <- DataTrack("/Volumes/puf_3/Nalm6/nalm6_dex_n499.bw",
strand="+",genome ="hg19");
> >>>> names(b1_dex)<-"Fkbp5";
> >>>> plotTracks(list(gtrack, b1_dex), from = 35540000, to =
35698000, type="histogram", chromosome="chr6")
> >>>
> >>> This crashes R completely with an exit message: Abort trap: 6
> >>>
> >>> There is an associated OSX crash report, which I've pasted
below.
> >>>
> >>> Any ideas what's going wrong?
> >>>
> >>> Thx -
> >>>
> >>> D
> >>>
> >>> Process: R [26469]
> >>> Path:
/Library/Frameworks/R.framework/Resources/bin/exec/R
> >>> Identifier: R
> >>> Version: ???
> >>> Code Type: X86-64 (Native)
> >>> Parent Process: bash [26264]
> >>> User ID: 501
> >>>
> >>> Date/Time: 2013-04-25 23:24:05.617 -0500
> >>> OS Version: Mac OS X 10.8.3 (12D78)
> >>> Report Version: 10
> >>>
> >>> Interval Since Last Report: 2714 sec
> >>> Crashes Since Last Report: 7
> >>> Per-App Crashes Since Last Report: 1
> >>> Anonymous UUID: 0FFEC26B-
8E19-7735-0F96-8B3430A59ECE
> >>>
> >>> Crashed Thread: 0 Dispatch queue: com.apple.main-thread
> >>>
> >>> Exception Type: EXC_CRASH (SIGABRT)
> >>> Exception Codes: 0x0000000000000000, 0x0000000000000000
> >>>
> >>> Application Specific Information:
> >>> [26469] stack overflow
> >>>
> >>> Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
> >>> 0 libsystem_kernel.dylib 0x00007fff8a832212
__pthread_kill + 10
> >>> 1 libsystem_c.dylib 0x00007fff926f0b54
pthread_kill + 90
> >>> 2 libsystem_c.dylib 0x00007fff92734e9e __abort
+ 159
> >>> 3 libsystem_c.dylib 0x00007fff92735d17
__stack_chk_fail + 195
> >>> 4 rtracklayer.so 0x0000000107427d24
bptFileFind + 212
> >>> 5 rtracklayer.so 0x0000000107429104
bbiOverlappingBlocks + 68
> >>> 6 rtracklayer.so 0x000000010742cb00
bigWigIntervalQuery + 128
> >>> 7 rtracklayer.so 0x0000000107425bc0
BWGFile_query + 448
> >>> 8 libR.dylib 0x0000000100071033
do_dotcall + 547 (dotcode.c:585)
> >>> 9 libR.dylib 0x0000000100099d67 Rf_eval
+ 1335 (eval.c:612)
> >>> 10 libR.dylib 0x00000001000a7771 do_set
+ 369 (eval.c:1863)
> >>> 11 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 12 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 13 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 14 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 15 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 16 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 17 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 18 libR.dylib 0x00000001000a86a2
R_execMethod + 1410 (eval.c:1076)
> >>> 19 methods.so 0x00000001005eb474
R_dispatchGeneric + 1972
> >>> 20 libR.dylib 0x00000001000d6235
do_standardGeneric + 565 (objects.c:1142)
> >>> 21 libR.dylib 0x0000000100099da3 Rf_eval
+ 1395 (eval.c:616)
> >>> 22 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 23 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 24 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 25 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 26 libR.dylib 0x00000001000a86a2
R_execMethod + 1410 (eval.c:1076)
> >>> 27 methods.so 0x00000001005eb474
R_dispatchGeneric + 1972
> >>> 28 libR.dylib 0x00000001000d6235
do_standardGeneric + 565 (objects.c:1142)
> >>> 29 libR.dylib 0x0000000100099da3 Rf_eval
+ 1395 (eval.c:616)
> >>> 30 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 31 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 32 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 33 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 34 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 35 libR.dylib 0x00000001000a7771 do_set
+ 369 (eval.c:1863)
> >>> 36 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 37 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 38 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 39 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 40 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 41 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 42 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 43 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 44 libR.dylib 0x00000001000a7771 do_set
+ 369 (eval.c:1863)
> >>> 45 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 46 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 47 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 48 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 49 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 50 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 51 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 52 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 53 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 54 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 55 libR.dylib 0x00000001000a86a2
R_execMethod + 1410 (eval.c:1076)
> >>> 56 methods.so 0x00000001005eb474
R_dispatchGeneric + 1972
> >>> 57 libR.dylib 0x00000001000d6235
do_standardGeneric + 565 (objects.c:1142)
> >>> 58 libR.dylib 0x0000000100099da3 Rf_eval
+ 1395 (eval.c:616)
> >>> 59 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 60 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 61 libR.dylib 0x000000010000eb81
do_lapply + 673 (apply.c:76)
> >>> 62 libR.dylib 0x00000001000d3c5a
do_internal + 362 (names.c:1168)
> >>> 63 libR.dylib 0x000000010009cd1f bcEval
+ 11791 (eval.c:4583)
> >>> 64 libR.dylib 0x000000010009994f Rf_eval
+ 287 (eval.c:515)
> >>> 65 libR.dylib 0x00000001000a86a2
R_execMethod + 1410 (eval.c:1076)
> >>> 66 methods.so 0x00000001005eb474
R_dispatchGeneric + 1972
> >>> 67 libR.dylib 0x00000001000d6235
do_standardGeneric + 565 (objects.c:1142)
> >>> 68 libR.dylib 0x0000000100099da3 Rf_eval
+ 1395 (eval.c:616)
> >>> 69 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 70 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 71 libR.dylib 0x00000001000a7771 do_set
+ 369 (eval.c:1863)
> >>> 72 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 73 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 74 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 75 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 76 libR.dylib 0x00000001000a7ad0
do_begin + 384 (eval.c:1534)
> >>> 77 libR.dylib 0x0000000100099bd6 Rf_eval
+ 934 (eval.c:584)
> >>> 78 libR.dylib 0x00000001000a529e
Rf_applyClosure + 1390 (eval.c:980)
> >>> 79 libR.dylib 0x0000000100099e05 Rf_eval
+ 1493 (eval.c:631)
> >>> 80 libR.dylib 0x00000001000c97df
Rf_ReplIteration + 879 (main.c:258)
> >>> 81 libR.dylib 0x00000001000c9e63
run_Rmainloop + 211 (main.c:307)
> >>> 82 R 0x0000000100000e5b main +
27
> >>> 83 R 0x0000000100000e34 start +
52
> >>>
> >>> Thread 1:: Dispatch queue: com.apple.libdispatch-manager
> >>> 0 libsystem_kernel.dylib 0x00007fff8a832d16 kevent
+ 10
> >>> 1 libdispatch.dylib 0x00007fff8affddea
_dispatch_mgr_invoke + 883
> >>> 2 libdispatch.dylib 0x00007fff8affd9ee
_dispatch_mgr_thread + 54
> >>>
> >>> Thread 2:
> >>> 0 libsystem_kernel.dylib 0x00007fff8a832322
__select + 10
> >>> 1 grDevices.so 0x0000000102ea8440
-[ELThread eventsThread:] + 176
> >>> 2 com.apple.Foundation 0x00007fff8f55ecd2
__NSThread__main__ + 1345
> >>> 3 libsystem_c.dylib 0x00007fff926ef7a2
_pthread_start + 327
> >>> 4 libsystem_c.dylib 0x00007fff926dc1e1
thread_start + 13
> >>>
> >>> Thread 0 crashed with X86 Thread State (64-bit):
> >>> rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx:
0x00007fff5fbf83f8 rdx: 0x0000000000000000
> >>> rdi: 0x0000000000000f07 rsi: 0x0000000000000006 rbp:
0x00007fff5fbf8420 rsp: 0x00007fff5fbf83f8
> >>> r8: 0x00007fff7abed278 r9: 0x0000000000000000 r10:
0x0000000020000000 r11: 0x0000000000000206
> >>> r12: 0x00007fff5fbf84f0 r13: 0x0000000000000004 r14:
0x00007fff7abee180 r15: 0x0000000107293010
> >>> rip: 0x00007fff8a832212 rfl: 0x0000000000000206 cr2:
0x00007fff7abe6ff0
> >>> Logical CPU: 0
> >>>
> >>> Binary Images:
> >>> 0x100000000 - 0x100000ff7 +R (???)
<d62f3923-33a9-31e3-8256-72609aff38df>
/Library/Frameworks/R.framework/Resources/bin/exec/R
> >>> 0x100003000 - 0x10026efff +libR.dylib (3)
<2FA3EDB5-B755-3972-AFBA-337B24212428>
/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libR.dylib
> >>> 0x10038c000 - 0x1003b5ff7 +libRblas.dylib (0)
<869671F9-C174-39EA-8496-9E88B343A3B0> /Library/Frameworks/R.framework
/Versions/3.0/Resources/lib/libRblas.dylib
> >>> 0x1003ba000 - 0x100470fcf +libgfortran.2.dylib (3)
<acf1816e-ea8a-4db9-a893-a4ef0cefffba> /Library/Frameworks/R.framework
/Versions/3.0/Resources/lib/libgfortran.2.dylib
> >>> 0x1004b5000 - 0x1004dffd9 +libreadline.5.2.dylib (5.2) /L
ibrary/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5
.2.dylib
> >>> 0x1005c2000 - 0x1005c9fff +utils.so (0) <8FBF096E-B6CE-
398E-A920-01DE1B245C41> /Library/Frameworks/R.framework/Versions/3.0/R
esources/library/utils/libs/utils.so
> >>> 0x1005e9000 - 0x1005eefff +methods.so (0)
<ab37fbdb-4142-3274-affb-b2fb7fd32fc7> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/methods/libs/methods.so
> >>> 0x1005f7000 - 0x1005f9fef +bitops.so (0) <f9843053-e910 -36cf-9df1-f4121020f969=""> /Library/Frameworks/R.framework/Versions/3.0/
Resources/library/bitops/libs/bitops.so
> >>> 0x1007f2000 - 0x1007f5fef +parallel.so (0) <e5a82d0c- 98bd-3e65-a7ee-1fab5c8b6264=""> /Library/Frameworks/R.framework/Versions/
3.0/Resources/library/parallel/libs/parallel.so
> >>> 0x1007f9000 - 0x1007fcfff +Biobase.so (0) <68F5403C-3382
-31CD-BDAB-4335D037FE5E> /Library/Frameworks/R.framework/Versions/3.0/
Resources/library/Biobase/libs/Biobase.so
> >>> 0x101194000 - 0x1011cffef +graphics.so (0)
<9E6394E4-AF37-3F25-A180-026E82583AF2> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/graphics/libs/graphics.so
> >>> 0x1011da000 - 0x1011e3fff +RCurl.so (0)
<66E5F530-2EF3-32CB-9373-1A6491E8366A> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/RCurl/libs/RCurl.so
> >>> 0x1011ed000 - 0x1011effff +lattice.so (0) <5A52F152-052E-
3C10-B9B3-5B486A910DD7> /Library/Frameworks/R.framework/Versions/3.0/R
esources/library/lattice/libs/lattice.so
> >>> 0x1011f2000 - 0x1011f3ff7 +plyr.so (0) <eb5cbaa5-f26d- 31d4-a292-f9ac0b2a189e=""> /Library/Frameworks/R.framework/Versions/3.0/R
esources/library/plyr/libs/plyr.so
> >>> 0x10120f000 - 0x101219fff +GenomicRanges.so (0)
<844F62EE-EEF9-3C56-812A-4E75A899CCB2> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/GenomicRanges/libs/GenomicRanges.so
> >>> 0x101224000 - 0x101230fff +colorspace.so (0) <0E7C120B-
148E-351A-92A1-C7963AC07174> /Library/Frameworks/R.framework/Versions/
3.0/Resources/library/colorspace/libs/colorspace.so
> >>> 0x10126e000 - 0x10127aff7 +cluster.so (0) <55B40D4D-8432
-3FEB-BBB7-8E65C948C17C> /Library/Frameworks/R.framework/Versions/3.0/
Resources/library/cluster/libs/cluster.so
> >>> 0x10127e000 - 0x10127fff7 +biovizBase.so (0)
<45F295A2-1E32-3E5C-96B9-1657114AE545> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/biovizBase/libs/biovizBase.so
> >>> 0x101396000 - 0x1013b1fff +grid.so (0) <0A0B45EC-AC1D-
3F33-A57E-6B234CC42505> /Library/Frameworks/R.framework/Versions/3.0/R
esources/library/grid/libs/grid.so
> >>> 0x1013be000 - 0x1013c3fff +Hmisc.so (0)
<45B74820-59DF-3402-9F5C-CB4A0A3E90D4> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/Hmisc/libs/Hmisc.so
> >>> 0x101420000 - 0x101436ff7 +XML.so (0) <e2b500ca- 56d9-35b8-aba5-802c93b67bf3=""> /Library/Frameworks/R.framework/Versions/
3.0/Resources/library/XML/libs/XML.so
> >>> 0x1029ae000 - 0x1029befff +tools.so (0)
<cef0dc14-7405-36d1-8696-da60801dca44> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/tools/libs/tools.so
> >>> 0x102e82000 - 0x102ebffff +grDevices.so (0)
<f7087219-a4a6-33c3-a0a8-19aaded62431> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/grDevices/libs/grDevices.so
> >>> 0x102edb000 - 0x102f65fef +stats.so (0) <99BD4BBA-
AE70-38A3-BC7E-ABEF5775D09A> /Library/Frameworks/R.framework/Versions/
3.0/Resources/library/stats/libs/stats.so
> >>> 0x103900000 - 0x103a7efff +libRlapack.dylib (3)
<c2dd755e-0f94-37f9-85f2-305e6f3720fb> /Library/Frameworks/R.framework
/Versions/3.0/Resources/lib/libRlapack.dylib
> >>> 0x103e66000 - 0x103e97ff7 +IRanges.so (0) <65E44E38-96BC-
3AC5-8490-5EDE934749F4> /Library/Frameworks/R.framework/Versions/3.0/R
esources/library/IRanges/libs/IRanges.so
> >>> 0x103f9a000 - 0x103fd5fef +Rsamtools.so (0)
<2ECCAE63-A2CE-3097-8AFF-31E11FB22989> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/Rsamtools/libs/Rsamtools.so
> >>> 0x107420000 - 0x107461ff7 +rtracklayer.so (0) <a1b33ecb- 4c97-3d25-a0c1-21609054a3ca=""> /Library/Frameworks/R.framework/Versions/
3.0/Resources/library/rtracklayer/libs/rtracklayer.so
> >>> 0x108000000 - 0x10802aff7 +Biostrings.so (0) <d2594ec2 -693d-3b33-ade7-6cd903626301=""> /Library/Frameworks/R.framework/Versions
/3.0/Resources/library/Biostrings/libs/Biostrings.so
> >>> 0x10f800000 - 0x10f8c8fff +RSQLite.so (0)
<e5afc155-2126-35f7-bb65-9ec27183117a> /Library/Frameworks/R.framework
/Versions/3.0/Resources/library/RSQLite/libs/RSQLite.so
> >>> 0x7fff619d3000 - 0x7fff61a0793f dyld (210.2.3)
<a40597aa-5529-3337-8c09-d8a014eb1578> /usr/lib/dyld
> >>> 0x7fff8973b000 - 0x7fff8975aff7 libresolv.9.dylib (51)
<0882DC2D-A892-31FF-AD8C-0BB518C48B23> /usr/lib/libresolv.9.dylib
> >>> 0x7fff8975b000 - 0x7fff897aaff7 libFontRegistry.dylib (100)
<2E03D7DA-9B8F-31BB-8FB5-3D3B6272127F> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/ATS.framework/Versions
/A/Resources/libFontRegistry.dylib
> >>> 0x7fff89b4c000 - 0x7fff89b59fff
com.apple.AppleFSCompression (49 - 1.0) <5508344A-
2A7E-3122-9562-6F363910A80E> /System/Library/PrivateFrameworks/AppleFS
Compression.framework/Versions/A/AppleFSCompression
> >>> 0x7fff89b5a000 - 0x7fff89bb0fff com.apple.HIServices (1.20
- 417) <a1129272-fec8-350b-ba26-5a97f23c413d> /System/Library/Framewor
ks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.fram
ework/Versions/A/HIServices
> >>> 0x7fff89e2f000 - 0x7fff89e5bff7 libRIP.A.dylib (331.0.4)
<4B261CE2-524E-3FA9-9437-B70DAC1EAB95> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/CoreGraphics.framework
/Versions/A/Resources/libRIP.A.dylib
> >>> 0x7fff89ebc000 - 0x7fff89ec1fff libcompiler_rt.dylib (30)
<08F8731D-5961-39F1-AD00-4590321D24A9>
/usr/lib/system/libcompiler_rt.dylib
> >>> 0x7fff89efd000 - 0x7fff8a083fff libBLAS.dylib (1073.4)
<c102c0f6-8cb6-3b49-ba6b-2eb61f0b2784> /System/Library/Frameworks/Acce
lerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/lib
BLAS.dylib
> >>> 0x7fff8a09a000 - 0x7fff8a0f1ff7
com.apple.ScalableUserInterface (1.0 - 1) <f1d43dfb-1796-361b-ad4b- 39f1eed3be19=""> /System/Library/Frameworks/QuartzCore.framework/Versions
/A/Frameworks/ScalableUserInterface.framework/Versions/A/ScalableUserI
nterface
> >>> 0x7fff8a373000 - 0x7fff8a3d0ff7 com.apple.audio.CoreAudio
(4.1.1 - 4.1.1) <d15f3fb3-be53-3545-ad37-9a25a597fe3c>
/System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
> >>> 0x7fff8a3d1000 - 0x7fff8a43afff libstdc++.6.dylib (56)
<eaa2b53e-eade-39cf-a0ef-fb9d4940672a> /usr/lib/libstdc++.6.dylib
> >>> 0x7fff8a43b000 - 0x7fff8a63bfff libicucore.A.dylib
(491.11.2) <fd6282d8-df3f-3842-8c2e-cf478d2b9669>
/usr/lib/libicucore.A.dylib
> >>> 0x7fff8a63c000 - 0x7fff8a755fff com.apple.ImageIO.framework
(3.2.0 - 849) <c52aed41-a7c2-300b-91fa-5af73718d243>
/System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
> >>> 0x7fff8a789000 - 0x7fff8a798fff com.apple.opengl (1.8.7 -
1.8.7) <26F7FF79-6BB2-3968-B70D-71D4E07C9551>
/System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
> >>> 0x7fff8a799000 - 0x7fff8a7c3ff7 com.apple.CoreVideo (1.8 -
99.4) <e5082966-6d81-3973-a05a-38aa5b85f886>
/System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
> >>> 0x7fff8a820000 - 0x7fff8a83bff7 libsystem_kernel.dylib
(2050.22.13) <5A961E2A-CFB8-362B-BC43-122704AEB047>
/usr/lib/system/libsystem_kernel.dylib
> >>> 0x7fff8a977000 - 0x7fff8a981fff
com.apple.speech.recognition.framework (4.1.5 - 4.1.5)
<d803919c-3102-3515-a178-61e9c86c46a1> /System/Library/Frameworks/Carb
on.framework/Versions/A/Frameworks/SpeechRecognition.framework/Version
s/A/SpeechRecognition
> >>> 0x7fff8a991000 - 0x7fff8a9e0ff7 libcorecrypto.dylib (106.2)
<ce0c29a3-c420-339b-adaa-52f4683233cc>
/usr/lib/system/libcorecrypto.dylib
> >>> 0x7fff8a9ed000 - 0x7fff8aa04fff libGL.dylib (8.7.25)
<15F5CB64-847B-3D3D-9663-E0523F15F513> /System/Library/Frameworks/Open
GL.framework/Versions/A/Libraries/libGL.dylib
> >>> 0x7fff8aa16000 - 0x7fff8aa18fff
com.apple.TrustEvaluationAgent (2.0 - 23) <a97d348b-32bf- 3e52-8df2-59bfad21e1a3=""> /System/Library/PrivateFrameworks/TrustEvaluat
ionAgent.framework/Versions/A/TrustEvaluationAgent
> >>> 0x7fff8aa1d000 - 0x7fff8aa2bfff com.apple.Librarian (1.1 -
1) <5AC28666-7642-395F-A923-C6F8A274BBBD> /System/Library/PrivateFrame
works/Librarian.framework/Versions/A/Librarian
> >>> 0x7fff8aa2c000 - 0x7fff8aa2dff7 libSystem.B.dylib (169.3)
<365477AB-D641-389D-B8F4-A1FAE9657EEE> /usr/lib/libSystem.B.dylib
> >>> 0x7fff8aa2e000 - 0x7fff8aa50ff7 libxpc.dylib (140.42)
<bbe558bd-5e55-35e4-89ed-1aa6b056d05a> /usr/lib/system/libxpc.dylib
> >>> 0x7fff8aa51000 - 0x7fff8ab02fff com.apple.LaunchServices
(539.7 - 539.7) <da7c602e-5e01-31b8-925d-b45360ca089f> /System/Library
/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchService
s.framework/Versions/A/LaunchServices
> >>> 0x7fff8ab03000 - 0x7fff8ab0afff com.apple.NetFS (5.0 - 4.0)
<82E24B9A-7742-3DA3-9E99-ED267D98C05E>
/System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
> >>> 0x7fff8ab22000 - 0x7fff8ab34ff7 libz.1.dylib (43)
<2A1551E8-A272-3DE5-B692-955974FE1416> /usr/lib/libz.1.dylib
> >>> 0x7fff8ab35000 - 0x7fff8ab3bfff libmacho.dylib (829)
<bf332ad9-e89f-387e-92a4-6e1ab74bd4d9> /usr/lib/system/libmacho.dylib
> >>> 0x7fff8ab3c000 - 0x7fff8ab3cfff libOpenScriptingUtil.dylib
(148.3) <f8681222-0969-3b10-8bce-c55a4b9c520c>
/usr/lib/libOpenScriptingUtil.dylib
> >>> 0x7fff8ade0000 - 0x7fff8ae11ff7
com.apple.DictionaryServices (1.2 - 184.4) <054F2D6F-9CFF-
3EF1-9778-25C551B616C1> /System/Library/Frameworks/CoreServices.framew
ork/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/Dict
ionaryServices
> >>> 0x7fff8ae12000 - 0x7fff8af0ffff libsqlite3.dylib (138.1)
<ade9cb98-d77d-300c-a32a-556b7440769f> /usr/lib/libsqlite3.dylib
> >>> 0x7fff8af10000 - 0x7fff8afcdff7 com.apple.ColorSync (4.8.0
- 4.8.0) <6CE333AE-EDDB-3768-9598-9DB38041DC55> /System/Library/Framew
orks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.fra
mework/Versions/A/ColorSync
> >>> 0x7fff8aff7000 - 0x7fff8aff8fff libsystem_blocks.dylib (59)
<d92dcbc3-541c-37bd-aade-acc75a0c59c8>
/usr/lib/system/libsystem_blocks.dylib
> >>> 0x7fff8aff9000 - 0x7fff8b00eff7 libdispatch.dylib (228.23)
<d26996bf-fc57-39eb-8829-f63585561e09>
/usr/lib/system/libdispatch.dylib
> >>> 0x7fff8b00f000 - 0x7fff8b016fff libGFXShared.dylib (8.7.25)
<869580B2-39CB-30C3-B76E-73BB4894B6B7> /System/Library/Frameworks/Open
GL.framework/Versions/A/Libraries/libGFXShared.dylib
> >>> 0x7fff8b0d9000 - 0x7fff8b22afff
com.apple.audio.toolbox.AudioToolbox (1.8 - 1.8) <c680ee1a-b4ed-3e77 -a08c-dc47922aca33=""> /System/Library/Frameworks/AudioToolbox.framework/
Versions/A/AudioToolbox
> >>> 0x7fff8b729000 - 0x7fff8b748ff7 com.apple.ChunkingLibrary
(2.0 - 133.3) <8BEC9AFB-DCAA-37E8-A5AB-24422B234ECF> /System/Library/P
rivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
> >>> 0x7fff8b749000 - 0x7fff8b749fff com.apple.CoreServices (57
- 57) <9DD44CB0-C644-35C3-8F57-0B41B3EC147D> /System/Library/Framework
s/CoreServices.framework/Versions/A/CoreServices
> >>> 0x7fff8b7da000 - 0x7fff8b7dcfff libquarantine.dylib (52)
<4BE2E642-A14F-340A-B482-5BD2AEFD9C24>
/usr/lib/system/libquarantine.dylib
> >>> 0x7fff8c093000 - 0x7fff8c19efff libFontParser.dylib (84.6)
<96C42E49-79A6-3475-B5E4-6A782599A6DA> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/ATS.framework/Versions
/A/Resources/libFontParser.dylib
> >>> 0x7fff8c1e3000 - 0x7fff8c1e7ff7 com.apple.TCC (1.0 - 1)
<f2f3b753-fc73-3543-8bbe-859fdbb4d6a6>
/System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
> >>> 0x7fff8c230000 - 0x7fff8c239ff7 com.apple.CommerceCore (1.0
- 26.1) <40A129A8-4E5D-3C7A-B299-8CB203C4C65D> /System/Library/Private
Frameworks/CommerceKit.framework/Versions/A/Frameworks/CommerceCore.fr
amework/Versions/A/CommerceCore
> >>> 0x7fff8c23a000 - 0x7fff8c631fff libLAPACK.dylib (1073.4)
<d632ec8b-2ba0-3853-800a-20da00a1091c> /System/Library/Frameworks/Acce
lerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/lib
LAPACK.dylib
> >>> 0x7fff8c652000 - 0x7fff8c661ff7 libxar.1.dylib (105)
<370ED355-E516-311E-BAFD-D80633A84BE1> /usr/lib/libxar.1.dylib
> >>> 0x7fff8c67c000 - 0x7fff8c690fff
com.apple.speech.synthesis.framework (4.1.12 - 4.1.12) <94EDF2AB-809C-
3D15-BED5-7AD45B2A7C16> /System/Library/Frameworks/ApplicationServices
.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/
SpeechSynthesis
> >>> 0x7fff8c698000 - 0x7fff8c6a5ff7 com.apple.NetAuth (4.0 -
4.0) <f5bc7d7d-af28-3c83-a674-dada48ff7810>
/System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
> >>> 0x7fff8c798000 - 0x7fff8c85dff7 com.apple.coreui (2.0 -
181.1) <83D2C92D-6842-3C9D-9289-39D5B4554C3A>
/System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
> >>> 0x7fff8c85e000 - 0x7fff8c899fff com.apple.LDAPFramework
(2.4.28 - 194.5) <67FBDB29-3B9F-309A-BA7C-AA5921D9A4FB>
/System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
> >>> 0x7fff8c89a000 - 0x7fff8ccb7fff FaceCoreLight (2.4.1)
<a34c9575-c4c1-31b1-809b-7751070b4e8b> /System/Library/PrivateFramewor
ks/FaceCoreLight.framework/Versions/A/FaceCoreLight
> >>> 0x7fff8ccc1000 - 0x7fff8ccc4fff libRadiance.dylib (849)
<f7d9a0fd-1195-34cb-bfe5-79daf3f40ac3> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libRadiance.dylib
> >>> 0x7fff8cde0000 - 0x7fff8ce3afff
com.apple.print.framework.PrintCore (8.3 - 387.2) <5BA0CBED-
4D80-386A-9646-F835C9805B71> /System/Library/Frameworks/ApplicationSer
vices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/P
rintCore
> >>> 0x7fff8ce3b000 - 0x7fff8ce60ff7 libc++abi.dylib (26)
<d86169f3-9f31-377a-9af3-db17142052e4> /usr/lib/libc++abi.dylib
> >>> 0x7fff8ce61000 - 0x7fff8ce9bff7 com.apple.GSS (3.0 - 2.0)
<970CAE00-1437-3F4E-B677-0FDB3714C08C>
/System/Library/Frameworks/GSS.framework/Versions/A/GSS
> >>> 0x7fff8cea3000 - 0x7fff8d1d3fff com.apple.HIToolbox (2.0 -
626.1) <656D08C2-9068-3532-ABDD-32EC5057CCB2> /System/Library/Framewor
ks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions
/A/HIToolbox
> >>> 0x7fff8d1d4000 - 0x7fff8d478ff7 com.apple.CoreImage (8.2.4
- 1.0.1) <4A6B017F-B9F7-36DA-943D-A95611F147EA> /System/Library/Framew
orks/QuartzCore.framework/Versions/A/Frameworks/CoreImage.framework/Ve
rsions/A/CoreImage
> >>> 0x7fff8d4fd000 - 0x7fff8d4fdfff libkeymgr.dylib (25)
<cc9e3394-be16-397f-926b-e579b60ee429> /usr/lib/system/libkeymgr.dylib
> >>> 0x7fff8d4fe000 - 0x7fff8d503fff com.apple.OpenDirectory
(10.8 - 151.10) <cf44120b-9b01-32dd-852e-c9c0e1243fc0> /System/Library
/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
> >>> 0x7fff8d504000 - 0x7fff8d606fff libcrypto.0.9.8.dylib (47)
<74F165AD-4572-3B26-B0E2-A97477FE59D0> /usr/lib/libcrypto.0.9.8.dylib
> >>> 0x7fff8ddb0000 - 0x7fff8ddb2ff7 libunc.dylib (25)
<92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib
> >>> 0x7fff8ddb3000 - 0x7fff8df9dff7 com.apple.CoreFoundation
(6.8 - 744.18) <a60c3c9b-3764-3291-844c-c487acf77c2c> /System/Library/
Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
> >>> 0x7fff8dfde000 - 0x7fff8e014fff com.apple.DebugSymbols (98
- 98) <14E788B1-4EB2-3FD7-934B-849534DFC198> /System/Library/PrivateFr
ameworks/DebugSymbols.framework/Versions/A/DebugSymbols
> >>> 0x7fff8e0ca000 - 0x7fff8e0d8fff libcommonCrypto.dylib
(60027) <baafe0c9-bb86-3ca7-88c0-e3cba98da06f>
/usr/lib/system/libcommonCrypto.dylib
> >>> 0x7fff8e0d9000 - 0x7fff8e11cff7
com.apple.RemoteViewServices (2.0 - 80.6) <5CFA361D-4853-3ACC-9EFC-
A2AC1F43BA4B> /System/Library/PrivateFrameworks/RemoteViewServices.fra
mework/Versions/A/RemoteViewServices
> >>> 0x7fff8e11d000 - 0x7fff8e11efff liblangid.dylib (116)
<864C409D-D56B-383E-9B44-A435A47F2346> /usr/lib/liblangid.dylib
> >>> 0x7fff8e480000 - 0x7fff8e4b7ff7 libssl.0.9.8.dylib (47)
<923945E6-C489-3406-903B-A362410753F8> /usr/lib/libssl.0.9.8.dylib
> >>> 0x7fff8e4b8000 - 0x7fff8e526fff com.apple.framework.IOKit
(2.0.1 - 755.22.5) <1547DA6F-9793-30A2-8E92-7368DE84D46C>
/System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
> >>> 0x7fff8e5e0000 - 0x7fff8e662ff7 com.apple.Heimdal (3.0 -
2.0) <c94b0c6c-1320-35a1-8143-fe252e7b2a08>
/System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
> >>> 0x7fff8e663000 - 0x7fff8e6cbff7 libc++.1.dylib (65.1)
<20E31B90-19B9-3C2A-A9EB-474E08F9FE05> /usr/lib/libc++.1.dylib
> >>> 0x7fff8e6cc000 - 0x7fff8e72bfff com.apple.AE (645.6 -
645.6) <44F403C1-660A-3543-AB9C-3902E02F936F> /System/Library/Framewor
ks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/
A/AE
> >>> 0x7fff8eae4000 - 0x7fff8eae8fff libGIF.dylib (849)
<6A664B4D-0A88-33F7-9064-0CD159AB9CE9> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libGIF.dylib
> >>> 0x7fff8eae9000 - 0x7fff8eaf1ff7 libsystem_dnssd.dylib
(379.37) <616FC901-151E-38BF-B2C4-24A351C5FAAD>
/usr/lib/system/libsystem_dnssd.dylib
> >>> 0x7fff8ed83000 - 0x7fff8edaafff
com.apple.framework.familycontrols (4.1 - 410) <50F5A52C-8FB6-300A-
977D-5CFDE4D5796B> /System/Library/PrivateFrameworks/FamilyControls.fr
amework/Versions/A/FamilyControls
> >>> 0x7fff8edab000 - 0x7fff8eeadfff libJP2.dylib (849)
<4EEA33EB-AF9F-365D-A572-F7D11AD1C76F> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libJP2.dylib
> >>> 0x7fff8eeae000 - 0x7fff8efcefff com.apple.desktopservices
(1.7.3 - 1.7.3) <707F77D2-EC0E-3431-840F-B984BD7ABDD6> /System/Library
/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopSer
vicesPriv
> >>> 0x7fff8f1b8000 - 0x7fff8f1b9fff
libDiagnosticMessagesClient.dylib (8) <8548E0DC-0D2F-
30B6-B045-FE8A038E76D8> /usr/lib/libDiagnosticMessagesClient.dylib
> >>> 0x7fff8f1ba000 - 0x7fff8f1d0fff
com.apple.MultitouchSupport.framework (235.29 - 235.29)
<617EC8F1-BCE7-3553-86DD-F857866E1257> /System/Library/PrivateFramewor
ks/MultitouchSupport.framework/Versions/A/MultitouchSupport
> >>> 0x7fff8f343000 - 0x7fff8f371ff7 libsystem_m.dylib (3022.6)
<b434be5c-25ab-3ebd-baa7-5304b34e3441>
/usr/lib/system/libsystem_m.dylib
> >>> 0x7fff8f3a1000 - 0x7fff8f3d7fff libsystem_info.dylib
(406.17) <4FFCA242-7F04-365F-87A6-D4EFB89503C1>
/usr/lib/system/libsystem_info.dylib
> >>> 0x7fff8f4c9000 - 0x7fff8f826ff7 com.apple.Foundation (6.8 -
945.16) <89BD68FD-72C8-35C1-94C6-3A07F097C50D>
/System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
> >>> 0x7fff8f827000 - 0x7fff8f833fff libCSync.A.dylib (331.0.4)
<c7043bb7-284d-3b9f-a5cb-78ade691b2d4> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/CoreGraphics.framework
/Versions/A/Resources/libCSync.A.dylib
> >>> 0x7fff8f882000 - 0x7fff8f91dfff com.apple.CoreSymbolication
(3.0 - 117) <c304fdb8-2ff7-34bc-858a-2b96c2b039d5> /System/Library/Pri
vateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolicatio
n
> >>> 0x7fff8f91e000 - 0x7fff8f93fff7 libCRFSuite.dylib (33)
<736ABE58-8DED-3289-A042-C25AF7AE5B23> /usr/lib/libCRFSuite.dylib
> >>> 0x7fff8f940000 - 0x7fff8f97fff7 com.apple.QD (3.42 - 285)
<8DF36FCA-C06B-30F4-A631-7BE2FF7E56D1> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/QD.framework/Versions/
A/QD
> >>> 0x7fff8f9ad000 - 0x7fff8fa07ff7 com.apple.opencl (2.2.18 -
2.2.18) <4A78E53C-17B0-3B2D-A9EA-EF8720FE4134>
/System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
> >>> 0x7fff8fa08000 - 0x7fff8fa09ff7 libdnsinfo.dylib (453.19)
<14202FFB-C3CA-3FCC-94B0-14611BF8692D>
/usr/lib/system/libdnsinfo.dylib
> >>> 0x7fff8fa56000 - 0x7fff8fa67ff7 libsasl2.2.dylib (166)
<649CAE0E-8FFE-3C60-A849-BE6300E4B726> /usr/lib/libsasl2.2.dylib
> >>> 0x7fff8fa68000 - 0x7fff8fac4ff7 com.apple.Symbolication
(1.3 - 93) <f2c7e0b6-b241-3020-b30a-0636d0fa3378> /System/Library/Priv
ateFrameworks/Symbolication.framework/Versions/A/Symbolication
> >>> 0x7fff8fc32000 - 0x7fff8fcd8ff7
com.apple.CoreServices.OSServices (557.6 - 557.6) <1BDB5456-0CE9-301C-
99C1-8EFD0D2BFCCD> /System/Library/Frameworks/CoreServices.framework/V
ersions/A/Frameworks/OSServices.framework/Versions/A/OSServices
> >>> 0x7fff8fe8b000 - 0x7fff8feb2ff7
com.apple.PerformanceAnalysis (1.16 - 16) <e4888388-f41b-313e-9cbb- 5807d077bda9=""> /System/Library/PrivateFrameworks/PerformanceAnalysis.fr
amework/Versions/A/PerformanceAnalysis
> >>> 0x7fff8ff0d000 - 0x7fff8ff2efff com.apple.Ubiquity (1.2 -
243.15) <c9a7ee77-b637-3676-b667-c0843bbb0409> /System/Library/Private
Frameworks/Ubiquity.framework/Versions/A/Ubiquity
> >>> 0x7fff901f3000 - 0x7fff901f3fff com.apple.Accelerate (1.8 -
Accelerate 1.8) <6AD48543-0864-3D40-80CE-01F184F24B45>
/System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
> >>> 0x7fff901f4000 - 0x7fff9021cfff libJPEG.dylib (849)
<5C9052F6-D0B3-39CC-8302-468B43D694D5> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libJPEG.dylib
> >>> 0x7fff90631000 - 0x7fff90632ff7 libremovefile.dylib (23.2)
<6763BC8E-18B8-3AD9-8FFA-B43713A7264F>
/usr/lib/system/libremovefile.dylib
> >>> 0x7fff90633000 - 0x7fff90633fff com.apple.Accelerate.vecLib
(3.8 - vecLib 3.8) <b5a18ee8-df81-38dd-acaf-7076b2a26225> /System/Libr
ary/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.frame
work/Versions/A/vecLib
> >>> 0x7fff90634000 - 0x7fff9064bfff com.apple.CFOpenDirectory
(10.8 - 151.10) <ffbba538-00b5-334e-ba5b-c8ad6cdcda14> /System/Library
/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirect
ory.framework/Versions/A/CFOpenDirectory
> >>> 0x7fff9068e000 - 0x7fff90696fff liblaunch.dylib (442.26.2)
<2F71CAF8-6524-329E-AC56-C506658B4C0C> /usr/lib/system/liblaunch.dylib
> >>> 0x7fff90697000 - 0x7fff906aaff7 com.apple.LangAnalysis
(1.7.0 - 1.7.0) <2F2694E9-A7BC-33C7-B4CF-8EC907DF0FEB> /System/Library
/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAn
alysis.framework/Versions/A/LangAnalysis
> >>> 0x7fff906ab000 - 0x7fff9103b6ff com.apple.CoreGraphics
(1.600.0 - 331.0.4) <4953961C-96DC-39D7-ADF5-B767F2A7E4E1> /System/Lib
rary/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/Co
reGraphics.framework/Versions/A/CoreGraphics
> >>> 0x7fff910ad000 - 0x7fff910c0ff7 libbsm.0.dylib (32)
<f497d3ce-40d9-3551-84b4-3d5e39600737> /usr/lib/libbsm.0.dylib
> >>> 0x7fff910f5000 - 0x7fff91d22ff7 com.apple.AppKit (6.8 -
1187.37) <faea8b77-210f-3c0f-b9cf-85a7595cca26>
/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
> >>> 0x7fff91ffb000 - 0x7fff920f0fff libiconv.2.dylib (34)
<fee8b996-eb44-37fa-b96e-d379664defe1> /usr/lib/libiconv.2.dylib
> >>> 0x7fff920f1000 - 0x7fff920fcfff libsystem_notify.dylib
(98.5) <c49275cc-835a-3207-afba-8c01374927b6>
/usr/lib/system/libsystem_notify.dylib
> >>> 0x7fff920fd000 - 0x7fff92109fff
com.apple.CrashReporterSupport (10.8.3 - 417) <48EDDDF3-5720-39D6
-B51F-D9AFB93327B3> /System/Library/PrivateFrameworks/CrashReporterSup
port.framework/Versions/A/CrashReporterSupport
> >>> 0x7fff92184000 - 0x7fff921a6ff7 com.apple.Kerberos (2.0 -
1) <c49b8820-34ed-39d7-a407-a3e854153556>
/System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
> >>> 0x7fff921a7000 - 0x7fff921d5fff
com.apple.CoreServicesInternal (154.2 - 154.2) <3E6196E6-F3B4-316F-
9E1F-13B6B9694C7E> /System/Library/PrivateFrameworks/CoreServicesInter
nal.framework/Versions/A/CoreServicesInternal
> >>> 0x7fff921d6000 - 0x7fff922a8ff7 com.apple.CoreText (260.0 -
275.16) <5BFC1D67-6A6F-38BC-9D90-9C712684EDAC>
/System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
> >>> 0x7fff922a9000 - 0x7fff922b4fff com.apple.CommonAuth (3.0 -
2.0) <7A953C1F-8B18-3E46-9BEA-26D9B5B7745D> /System/Library/PrivateFra
meworks/CommonAuth.framework/Versions/A/CommonAuth
> >>> 0x7fff922b5000 - 0x7fff922b5fff
com.apple.ApplicationServices (45 - 45) <a3abf20b-ed3a-32b5-830e- b37831a45a80=""> /System/Library/Frameworks/ApplicationServices.framework
/Versions/A/ApplicationServices
> >>> 0x7fff922b6000 - 0x7fff92323ff7 com.apple.datadetectorscore
(4.1 - 269.2) <4FD4A7CE-BB00-3AAB-B7AA-AE395D5400EC> /System/Library/P
rivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsC
ore
> >>> 0x7fff92328000 - 0x7fff9237dff7 libTIFF.dylib (849)
<c4d0e196-9319-319b-af72-8b63fb5af71b> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libTIFF.dylib
> >>> 0x7fff92522000 - 0x7fff925afff7 com.apple.SearchKit (1.4.0
- 1.4.0) <c7f43889-f8bf-3cb9-ad66-11aefcbcede7> /System/Library/Framew
orks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/
Versions/A/SearchKit
> >>> 0x7fff925b0000 - 0x7fff925b1ff7 libsystem_sandbox.dylib
(220.2) <6838A6FD-8626-3356-BB4F-BB4787216207>
/usr/lib/system/libsystem_sandbox.dylib
> >>> 0x7fff925b2000 - 0x7fff925bdff7
com.apple.bsd.ServiceManagement (2.0 - 2.0) <c12962d5-85fb-349e- aa56-64f4f487f219=""> /System/Library/Frameworks/ServiceManagement.framew
ork/Versions/A/ServiceManagement
> >>> 0x7fff92611000 - 0x7fff92649fff libncurses.5.4.dylib (37.3)
<68D5B5F5-8252-3F1E-AFF1-C6AFE145DBC1> /usr/lib/libncurses.5.4.dylib
> >>> 0x7fff926db000 - 0x7fff927a7ff7 libsystem_c.dylib (825.26)
<4C9EB006-FE1F-3F8F-8074-DFD94CF2CE7B>
/usr/lib/system/libsystem_c.dylib
> >>> 0x7fff927a8000 - 0x7fff92943fef com.apple.vImage (6.0 -
6.0) <fae13169-295a-33a5-8e6b-7c2cc1407fa7> /System/Library/Frameworks
/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/
A/vImage
> >>> 0x7fff92c33000 - 0x7fff92c77fff libcups.2.dylib (327.3)
<71E771A1-0489-3417-8A4A-56A2C930F80C> /usr/lib/libcups.2.dylib
> >>> 0x7fff92c78000 - 0x7fff92d12fff libvMisc.dylib (380.6)
<714336EA-1C0E-3735-B31C-19DFDAAF6221> /System/Library/Frameworks/Acce
lerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/lib
vMisc.dylib
> >>> 0x7fff92d13000 - 0x7fff92d64ff7
com.apple.SystemConfiguration (1.12.2 - 1.12.2)
<a4341bbd-a330-3a57-8891-e9c1a286a72d> /System/Library/Frameworks/Syst
emConfiguration.framework/Versions/A/SystemConfiguration
> >>> 0x7fff92dba000 - 0x7fff92ddafff libPng.dylib (849)
<f4c23a55-f17b-3e4f-9e80-bc97f778ba49> /System/Library/Frameworks/Imag
eIO.framework/Versions/A/Resources/libPng.dylib
> >>> 0x7fff92e08000 - 0x7fff92e89fff com.apple.Metadata (10.7.0
- 707.5) <4140B1F6-7D73-33C7-B3F2-4DB349C31AE9> /System/Library/Framew
orks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/V
ersions/A/Metadata
> >>> 0x7fff93132000 - 0x7fff93134fff libCVMSPluginSupport.dylib
(8.7.25) <a45e21e3-4b40-39b0-a8b6-411526a84f47> /System/Library/Framew
orks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
> >>> 0x7fff93135000 - 0x7fff93181ff7 libauto.dylib (185.1)
<73CDC482-16E3-3FC7-9BB4-FBA2DA44DBC2> /usr/lib/libauto.dylib
> >>> 0x7fff93184000 - 0x7fff93189fff libcache.dylib (57)
<65187C6E-3FBF-3EB8-A1AA-389445E2984D> /usr/lib/system/libcache.dylib
> >>> 0x7fff931e5000 - 0x7fff931ebff7 libunwind.dylib (35.1)
<21703D36-2DAB-3D8B-8442-EAAB23C060D3> /usr/lib/system/libunwind.dylib
> >>> 0x7fff931ec000 - 0x7fff932e9ff7 libxml2.2.dylib (22.3)
<47B09CB2-C636-3024-8B55-6040F7829B4C> /usr/lib/libxml2.2.dylib
> >>> 0x7fff932ea000 - 0x7fff9332dff7 com.apple.bom (12.0 - 192)
<0BF1F2D2-3648-36B7-BE4B-551A0173209B>
/System/Library/PrivateFrameworks/Bom.framework/Versions/A/Bom
> >>> 0x7fff93385000 - 0x7fff9349d92f libobjc.A.dylib (532.2)
<90D31928-F48D-3E37-874F-220A51FD9E37> /usr/lib/libobjc.A.dylib
> >>> 0x7fff934e7000 - 0x7fff934eaff7 libdyld.dylib (210.2.3)
<f59367c9-c110-382b-a695-9035a6dd387e> /usr/lib/system/libdyld.dylib
> >>> 0x7fff934eb000 - 0x7fff934ebffd
com.apple.audio.units.AudioUnit (1.8 - 1.8) <173346B7-614C-380B-
8E80-9BD1BE501674>
/System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
> >>> 0x7fff934f8000 - 0x7fff93535fef libGLImage.dylib (8.7.25)
<139A9892-A6F2-3F49-87FB-E7AC3F56E003> /System/Library/Frameworks/Open
GL.framework/Versions/A/Libraries/libGLImage.dylib
> >>> 0x7fff93536000 - 0x7fff9354dfff
com.apple.GenerationalStorage (1.1 - 132.3) <fd4a84b3-13a8-3c60-a59e- 25a361447a17=""> /System/Library/PrivateFrameworks/GenerationalStorage.fr
amework/Versions/A/GenerationalStorage
> >>> 0x7fff935ee000 - 0x7fff935fcff7 libkxld.dylib (2050.22.13)
<4AAF0573-8632-3D06-BE32-C5675F77638D> /usr/lib/system/libkxld.dylib
> >>> 0x7fff935fd000 - 0x7fff93628fff libxslt.1.dylib (11.3)
<441776B8-9130-3893-956F-39C85FFA644F> /usr/lib/libxslt.1.dylib
> >>> 0x7fff93629000 - 0x7fff93630fff libcopyfile.dylib (89)
<876573D0-E907-3566-A108-577EAD1B6182>
/usr/lib/system/libcopyfile.dylib
> >>> 0x7fff93e5e000 - 0x7fff93ea6fff libcurl.4.dylib (69.2)
<ebdbf42d-e4a6-3d05-a76b-2817d79d59e2> /usr/lib/libcurl.4.dylib
> >>> 0x7fff93ea7000 - 0x7fff93f0ffff libvDSP.dylib (380.6)
<cd4c5eeb-9e63-30c4-8103-7a5eaea0be60> /System/Library/Frameworks/Acce
lerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/lib
vDSP.dylib
> >>> 0x7fff94062000 - 0x7fff94297ff7 com.apple.CoreData (106.1 -
407.7) <24E0A6B4-9ECA-3D12-B26A-72B9DCF09768>
/System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
> >>> 0x7fff9429b000 - 0x7fff94319ff7
com.apple.securityfoundation (6.0 - 55115.4)
<c5461971-e455-31a6-99b8-af80c4bc26dd> /System/Library/Frameworks/Secu
rityFoundation.framework/Versions/A/SecurityFoundation
> >>> 0x7fff9431b000 - 0x7fff943b9ff7 com.apple.ink.framework
(10.8.2 - 150) <84B9825C-3822-375F-BE58-A753444FBDE2> /System/Library/
Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versio
ns/A/Ink
> >>> 0x7fff95378000 - 0x7fff9568fff7
com.apple.CoreServices.CarbonCore (1037.5 - 1037.5)
<731D8F92-1C52-3613-BA01-EFEA54DADF41> /System/Library/Frameworks/Core
Services.framework/Versions/A/Frameworks/CarbonCore.framework/Versions
/A/CarbonCore
> >>> 0x7fff95690000 - 0x7fff95710ff7
com.apple.ApplicationServices.ATS (332 - 341.1)
<bd83b039-ab25-3e3e-9975-a67dae66988b> /System/Library/Frameworks/Appl
icationServices.framework/Versions/A/Frameworks/ATS.framework/Versions
/A/ATS
> >>> 0x7fff95711000 - 0x7fff95715fff libCGXType.A.dylib
(331.0.4) <251D4D2D-92B9-3D56-B348-CD67397F71FE> /System/Library/Frame
works/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics
.framework/Versions/A/Resources/libCGXType.A.dylib
> >>> 0x7fff9595f000 - 0x7fff95c30ff7 com.apple.security (7.0 -
55179.11) <73958084-5BBC-3597-A751-7370B0C247E5>
/System/Library/Frameworks/Security.framework/Versions/A/Security
> >>> 0x7fff95c4d000 - 0x7fff95c51fff libpam.2.dylib (20)
<c8f45864-5b58-3237-87e1-2c258a1d73b8> /usr/lib/libpam.2.dylib
> >>> 0x7fff95ccf000 - 0x7fff95e44fff com.apple.CFNetwork
(596.3.3 - 596.3.3) <3739DC8D-8610-3740-80EC-43E130779CB8>
/System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
> >>> 0x7fff95e45000 - 0x7fff95e52fff libbz2.1.0.dylib (29)
<ce9785e8-b535-3504-b392-82f0064d9af2> /usr/lib/libbz2.1.0.dylib
> >>> 0x7fff95e53000 - 0x7fff95e59fff com.apple.DiskArbitration
(2.5.2 - 2.5.2) <c713a35a-360e-36ce-ac0a-25c86a3f50ca> /System/Library
/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
> >>> 0x7fff95e5a000 - 0x7fff95e5afff com.apple.vecLib (3.8 -
vecLib 3.8) <794317C7-4E38-338A-A874-5E18001C8503>
/System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
> >>> 0x7fff95fbd000 - 0x7fff95fc1fff com.apple.IOSurface (86.0.4
- 86.0.4) <26F01CD4-B76B-37A3-989D-66E8140542B3>
/System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
> >>> 0x7fff963ff000 - 0x7fff965adfff com.apple.QuartzCore (1.8 -
304.2) <234EABE1-067C-3DAE-BEAC-674526E232C2>
/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
> >>> 0x7fff965ae000 - 0x7fff965bcff7 libsystem_network.dylib
(77.10) <0D99F24E-56FE-380F-B81B-4A4C630EE587>
/usr/lib/system/libsystem_network.dylib
> >>> 0x7fff96622000 - 0x7fff96626fff libCoreVMClient.dylib
(32.3) <ad8391d9-56dd-3a78-a294-6a30e6ece1a2> /System/Library/Framewor
ks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
> >>> 0x7fff96627000 - 0x7fff96701fff com.apple.backup.framework
(1.4.2 - 1.4.2) <0B557393-CD2A-3076-BED2-F28D02E1EC1D>
/System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup
> >>> 0x7fff96702000 - 0x7fff9674cff7 libGLU.dylib (8.7.25)
<c243c6d3-3384-3db1-bb15-e27b65c87294> /System/Library/Frameworks/Open
GL.framework/Versions/A/Libraries/libGLU.dylib
> >>>
> >>> External Modification Summary:
> >>> Calls made by other processes targeting this process:
> >>> task_for_pid: 2
> >>> thread_create: 0
> >>> thread_set_state: 0
> >>> Calls made by this process:
> >>> task_for_pid: 0
> >>> thread_create: 0
> >>> thread_set_state: 0
> >>> Calls made by all processes on this machine:
> >>> task_for_pid: 18259
> >>> thread_create: 2
> >>> thread_set_state: 0
> >>>
> >>> VM Region Summary:
> >>> ReadOnly portion of Libraries: Total=154.5M resident=91.3M(59%)
swapped_out_or_unallocated=63.1M(41%)
> >>> Writable regions: Total=445.0M written=272.1M(61%)
resident=289.8M(65%) swapped_out=1276K(0%) unallocated=155.2M(35%)
> >>>
> >>> REGION TYPE VIRTUAL
> >>> =========== =======
> >>> ATS (font support) 32.3M
> >>> ATS (font support) (reserved) 4K reserved VM
address space (unallocated)
> >>> CG backing stores 10.3M
> >>> CG image 4K
> >>> CG raster data 96K
> >>> CG shared images 192K
> >>> CoreServices 7332K
> >>> MALLOC 336.8M
> >>> MALLOC guard page 48K
> >>> MALLOC_LARGE (reserved) 228K reserved VM
address space (unallocated)
> >>> Memory tag=242 12K
> >>> STACK GUARD 56.0M
> >>> Stack 9232K
> >>> VM_ALLOCATE 16.1M
> >>> __DATA 50.6M
> >>> __IMAGE 528K
> >>> __LINKEDIT 53.8M
> >>> __TEXT 100.6M
> >>> __UNICODE 544K
> >>> mapped file 59.9M
> >>> shared memory 308K
> >>> =========== =======
> >>> TOTAL 734.5M
> >>> TOTAL, minus reserved VM space 734.3M
> >>>
> >>> Model: MacBookPro10,1, BootROM MBP101.00EE.B02, 4 processors,
Intel Core i7, 2.6 GHz, 16 GB, SMC 2.3f35
> >>> Graphics: Intel HD Graphics 4000, Intel HD Graphics 4000, Built-
In, 512 MB
> >>> Graphics: NVIDIA GeForce GT 650M, NVIDIA GeForce GT 650M, PCIe,
1024 MB
> >>> Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE,
0x4D34373142314737334248302D434B302020
> >>> Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE,
0x4D34373142314737334248302D434B302020
> >>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4,
0xEF), Broadcom BCM43xx 1.0 (5.106.98.100.16)
> >>> Bluetooth: Version 4.1.3f3 11349, 2 service, 18 devices, 1
incoming serial ports
> >>> Network Service: Wi-Fi, AirPort, en0
> >>> Serial ATA Device: APPLE SSD SM512E, 500.28 GB
> >>> USB Device: FreeAgent GoFlex, 0x0bc2 (Seagate LLC), 0x5031,
0x14a00000 / 4
> >>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024,
0x1a100000 / 2
> >>> USB Device: FaceTime HD Camera (Built-in), apple_vendor_id,
0x8510, 0x1a110000 / 3
> >>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024,
0x1d100000 / 2
> >>> USB Device: hub_device, 0x0424 (SMSC), 0x2512, 0x1d180000 / 3
> >>> USB Device: BRCM20702 Hub, 0x0a5c (Broadcom Corp.), 0x4500,
0x1d181000 / 5
> >>> USB Device: Bluetooth USB Host Controller, apple_vendor_id,
0x8286, 0x1d181300 / 6
> >>> USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id,
0x0262, 0x1d182000 / 4
> >>> USB Device: hub_device, 0x0424 (SMSC), 0x2514, 0x14100000 / 1
> >>> USB Device: ScanSnap S1500, 0x04c5 (Fujitsu Ltd.), 0x11a2,
0x14140000 / 3
> >>> USB Device: Microsoft Digital Sound System 80, 0x045e
(Microsoft Corporation), 0x0014, 0x14120000 / 2
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> -- output of sessionInfo():
> >>>
> >>>> sessionInfo()
> >>> R version 3.0.0 (2013-04-03)
> >>> Platform: x86_64-apple-darwin10.8.0 (64-bit)
> >>>
> >>> locale:
> >>> [1]
en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
> >>>
> >>> attached base packages:
> >>> [1] parallel grid stats graphics grDevices utils
datasets methods base
> >>>
> >>> other attached packages:
> >>> [1] GenomicRanges_1.12.2 IRanges_1.18.0 BiocGenerics_0.6.0
Gviz_1.4.0
> >>>
> >>> loaded via a namespace (and not attached):
> >>> [1] AnnotationDbi_1.22.2 Biobase_2.20.0 biomaRt_2.16.0
Biostrings_2.28.0
> >>> [5] biovizBase_1.8.0 bitops_1.0-5
BSgenome_1.28.0 cluster_1.14.4
> >>> [9] colorspace_1.2-2 DBI_0.2-6
dichromat_2.0-0 GenomicFeatures_1.12.0
> >>> [13] Hmisc_3.10-1 labeling_0.1
lattice_0.20-15 munsell_0.4
> >>> [17] plyr_1.8 RColorBrewer_1.0-5
RCurl_1.95-4.1 Rsamtools_1.12.2
> >>> [21] RSQLite_0.11.3 rtracklayer_1.20.1 scales_0.2.3
stats4_3.0.0
> >>> [25] stringr_0.6.2 tools_3.0.0 XML_3.95-0.2
zlibbioc_1.6.0
> >>>
> >>> --
> >>> Sent via the guest posting facility at bioconductor.org.
> >>>
> >>> _______________________________________________
> >>> Bioconductor mailing list
> >>> Bioconductor@r-project.org
> >>> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >>> Search the archives:
http://news.gmane.org/gmane.science.biology.informatics.conductor
> >
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@r-project.org
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>
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