makeVennDiagram
3
0
Entering edit mode
Julie Zhu ★ 4.3k
@julie-zhu-3596
Last seen 4 months ago
United States
Camila, Thanks for reading the previous posts, sharing the links and your thoughts! Yes, if there is one peak in peak1 that overlaps n peaks in peak2, then the number of peaks shared between peak1 and peak2 is set to 1 instead of n. Best regards, Julie On 10/23/13 4:07 PM, "Camila Lopez-anido" <lopezanido at="" wisc.edu=""> wrote: > Hi Julie,? > > I am using makeVennDiagram, but I'm not sure how the program calculated the > number of unique or overlapping peaks... I can see that others had similar > questions > (http://grokbase.com/t/r/bioconductor/12a1dya1v7/bioc-chippeakanno- slightly-di > fferent-results-between-makevenndiagram-and-findpeakoverlaps) in the past. > > > You mention previously that it has to do with many peaks1 within a peak of > peak2 (etc)... does this mean that these events are weighted to determine the > final values for unique or overlapping peaks in makeVennDiagram? (This made > sense to me since it's a way of dealing with the issue of having many peaks1 > within a peak of peak2 (etc), and thus lets you represent the data as a venn > diagram.) > > > Thanks, > Camila
• 921 views
ADD COMMENT
0
Entering edit mode
@camila-lopez-anido-6198
Last seen 9.6 years ago
Hi Julie,? I am using makeVennDiagram, but I'm not sure how the program calculated the number of unique or overlapping peaks... I can see that others had similar questions (http://grokbase.com/t/r/bioconductor/12a1dya1v7/bioc-chippeakanno- slightly-different-results-between-makevenndiagram-and- findpeakoverlaps) in the past. You mention previously that it has to do with many peaks1 within a peak of peak2 (etc)... does this mean that these events are weighted to determine the final values for unique or overlapping peaks in makeVennDiagram? (This made sense to me since it's a way of dealing with the issue of having many peaks1 within a peak of peak2 (etc), and thus lets you represent the data as a venn diagram.) Thanks, Camila
ADD COMMENT
0
Entering edit mode
@camila-lopez-anido-6198
Last seen 9.6 years ago
Thanks for the quick response! So does this mean that the p-value given is conservative? Thanks again, Camila On 10/23/13, "Zhu, Lihua (Julie)" <julie.zhu@umassmed.edu> wrote: > Camila, > > Thanks for reading the previous posts, sharing the links and your thoughts! > > Yes, if there is one peak in peak1 that overlaps n peaks in peak2, then the > number of peaks shared between peak1 and peak2 is set to 1 instead of n. > > Best regards, > > Julie > > > On 10/23/13 4:07 PM, "Camila Lopez-anido" <lopezanido@wisc.edu> wrote: > > > Hi Julie, > > > > I am using makeVennDiagram, but I'm not sure how the program calculated the > > number of unique or overlapping peaks... I can see that others had similar > > questions > > (http://grokbase.com/t/r/bioconductor/12a1dya1v7/bioc- chippeakanno-slightly-di > > fferent-results-between-makevenndiagram-and-findpeakoverlaps) in the past. > > > > > > You mention previously that it has to do with many peaks1 within a peak of > > peak2 (etc)... does this mean that these events are weighted to determine the > > final values for unique or overlapping peaks in makeVennDiagram? (This made > > sense to me since it's a way of dealing with the issue of having many peaks1 > > within a peak of peak2 (etc), and thus lets you represent the data as a venn > > diagram.) > > > > > > Thanks, > > Camila > > > [[alternative HTML version deleted]]
ADD COMMENT
0
Entering edit mode
Julie Zhu ★ 4.3k
@julie-zhu-3596
Last seen 4 months ago
United States
Camila, Yes, you are right about the p-value. Best regards, Julie On 10/24/13 9:24 AM, "Camila Lopez-anido" <lopezanido@wisc.edu> wrote: Thanks for the quick response! So does this mean that the p-value given is conservative? Thanks again, Camila On 10/23/13, "Zhu, Lihua (Julie)" <julie.zhu@umassmed.edu> wrote: Camila, Thanks for reading the previous posts, sharing the links and your thoughts! Yes, if there is one peak in peak1 that overlaps n peaks in peak2, then the number of peaks shared between peak1 and peak2 is set to 1 instead of n. Best regards, Julie On 10/23/13 4:07 PM, "Camila Lopez-anido" <lopezanido@wisc.edu> wrote: > Hi Julie, > > I am using makeVennDiagram, but I'm not sure how the program calculated the > number of unique or overlapping peaks... I can see that others had similar > questions > (http://grokbase.com/t/r/bioconductor/12a1dya1v7/bioc-chippeakanno- slightly-di > fferent-results-between-makevenndiagram-and-findpeakoverlaps) in the past. > > > You mention previously that it has to do with many peaks1 within a peak of > peak2 (etc)... does this mean that these events are weighted to determine the > final values for unique or overlapping peaks in makeVennDiagram? (This made > sense to me since it's a way of dealing with the issue of having many peaks1 > within a peak of peak2 (etc), and thus lets you represent the data as a venn > diagram.) > > > Thanks, > Camila [[alternative HTML version deleted]]
ADD COMMENT

Login before adding your answer.

Traffic: 725 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6