� SequenceAnalysisData� is not available
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Last seen 9.6 years ago
Hi, I am trying to install the package 'StatisticalComputing2013' (course material from the October 2013 course on "Introduction to Statistical Computing with R and Bioconductor". I downloaded the tarball from http://www.bioconductor.org/help/course-materials/2013/Akron- Oct-2013/StatisticalComputing2013_0.3.1.tar.gz and used the shell command R CMD INSTALL StatisticalComputing2013_0.3.1.tar.gz to install the package. This gives me the error message: ERROR: dependency ???SequenceAnalysisData??? is not available for package ???StatisticalComputing2013??? I found the download statistics on of the ???SequenceAnalysisData??? package at http://bioconductor.org/packages/stats/bioc/SequenceAnalysisData.html but it also says "Note that SequenceAnalysisData doesn't belong to the current release or devel version of Bioconductor anymore." I have tried to find the 'SequenceAnalysisData' package in the archived versions of Bioconductor and elsewhere online, but so far not avail. Does anybody now where this package could be found? Thanks! John -- output of sessionInfo(): R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Sent via the guest posting facility at bioconductor.org.
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 3.1 years ago
United States
----- Original Message ----- > From: "John [guest]" <guest at="" bioconductor.org=""> > To: bioconductor at r-project.org, johnmillerflorida at yahoo.com > Sent: Sunday, November 3, 2013 4:50:16 PM > Subject: ? SequenceAnalysisData? is not available > > > > Hi, > > I am trying to install the package 'StatisticalComputing2013' (course > material from the October 2013 course on "Introduction to > Statistical Computing with R and Bioconductor". > > I downloaded the tarball from > http://www.bioconductor.org/help/course-materials/2013/Akron- Oct-2013/StatisticalComputing2013_0.3.1.tar.gz > > and used the shell command > > R CMD INSTALL StatisticalComputing2013_0.3.1.tar.gz > > to install the package. > > This gives me the error message: > > ERROR: dependency ???SequenceAnalysisData??? is not available for > package ???StatisticalComputing2013??? > > I found the download statistics on of the ???SequenceAnalysisData??? > package at > > http://bioconductor.org/packages/stats/bioc/SequenceAnalysisData.html > > but it also says "Note that SequenceAnalysisData doesn't belong to > the current release or devel version of Bioconductor anymore." > > I have tried to find the 'SequenceAnalysisData' package in the > archived versions of Bioconductor and elsewhere online, but so far > not avail. > > Does anybody now where this package could be found? > I added a link at: http://www.bioconductor.org/help/course-materials/2013/Akron-Oct-2013/ which points to the package: http://www.bioconductor.org/help/course-materials/2013/Akron- Oct-2013/SequenceAnalysisData_0.1.4.tar.gz Dan > Thanks! > > John > > > > > > > -- output of sessionInfo(): > > R version 3.0.2 (2013-09-25) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >
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Dan, thank you so much for your quick action. Having a link to the package helps a lot! John On Monday, November 4, 2013 1:48 AM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote: ----- Original Message ----- > From: "John [guest]" <guest@bioconductor.org> > To: bioconductor@r-project.org, johnmillerflorida@yahoo.com > Sent: Sunday, November 3, 2013 4:50:16 PM > Subject: â  SequenceAnalysisDataâ  is not available > > > > Hi, > > I am trying to install the package 'StatisticalComputing2013' (course > material from the October 2013 course on "Introduction to > Statistical Computing with R and Bioconductor". > > I downloaded the tarball from > http://www.bioconductor.org/help/course-materials/2013/Akron- Oct-2013/StatisticalComputing2013_0.3.1.tar.gz > > and used the shell command > > R CMD INSTALL StatisticalComputing2013_0.3.1.tar.gz > > to install the package. > > This gives me the error message: > > ERROR: dependency ‘SequenceAnalysisData’ is not available for > package ‘StatisticalComputing2013’ > > I found the download statistics on of the ‘SequenceAnalysisData’ > package at > > http://bioconductor.org/packages/stats/bioc/SequenceAnalysisData.html > > but it also says "Note that SequenceAnalysisData doesn't belong to > the current release or devel version of Bioconductor anymore." > > I have tried to find the 'SequenceAnalysisData' package in the > archived versions of Bioconductor and elsewhere online, but so far > not avail. > > Does anybody now where this package could be found? > I added a link at: http://www.bioconductor.org/help/course-materials/2013/Akron-Oct-2013/ which points to the package: http://www.bioconductor.org/help/course-materials/2013/Akron- Oct-2013/SequenceAnalysisData_0.1.4.tar.gz Dan > Thanks! > > John > > > > > > >  -- output of sessionInfo(): > > R version 3.0.2 (2013-09-25) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: >  [1] LC_CTYPE=en_US.UTF-8      LC_NUMERIC=C >  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8 >  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8 >  [7] LC_PAPER=en_US.UTF-8      LC_NAME=C >  [9] LC_ADDRESS=C              LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats    graphics  grDevices utils    datasets  methods base > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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