Isobar module
2
0
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@trinidad-martin-campos-6225
Last seen 7.3 years ago
Good afternoon, I am trying to install isobar via Bioconductor and I got this message: Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘isobar’ is not available I checked the website and I saw it is available for Linux as well so I dont know where is the problem, can you help me please?? Thanks a lot Trinidad [[alternative HTML version deleted]]
isobar isobar • 734 views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 9 months ago
United States
----- Original Message ----- > From: "Trinidad Mart?n Campos" <trinidadmartinc at="" gmail.com=""> > To: bioconductor at r-project.org > Sent: Tuesday, November 5, 2013 3:55:08 AM > Subject: [BioC] Isobar module > > Good afternoon, > > I am trying to install isobar via Bioconductor and I got this > message: > > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > package ?isobar? is not available > > I checked the website and I saw it is available for Linux as well so > I dont > know where is the problem, can you help me please?? > > Thanks a lot > Try and install it as follows: source("http://bioconductor.org/biocLite.R") biocLite("isobar") If that does not work, please send the output of sessionInfo() to this list. You may be using a version of R/Bioconductor that is too old to support the isobar package. Dan > Trinidad > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 9 months ago
United States
----- Original Message ----- > From: "Trinidad Mart?n Campos" <trinidadmartinc at="" gmail.com=""> > To: "Dan Tenenbaum" <dtenenba at="" fhcrc.org=""> > Cc: bioconductor at r-project.org > Sent: Tuesday, November 5, 2013 10:50:54 AM > Subject: Re: [BioC] Isobar module > > > Hello > > > I already tried with it and the output is: I am using R 2.10.1 and > BioC 2.5 > > > Warning in install.packages(pkgs = pkgs, repos = repos, ...) : > argument 'lib' is missing: using '/usr/local/lib/R/site-library' > Warning message: In getDependencies(pkgs, dependencies, available, > lib) : package ?isobar? is not available > isobar was introduced in BioC 2.9, meaning you need to be running R-2.14 or later in order to use it. We recommend using the latest release versions (BioC 2.13 and R 3.0.2). Dan > > > Thanks a lot!!! > Best, > Trini > > > > 2013/11/5 Dan Tenenbaum < dtenenba at fhcrc.org > > > > > > > > ----- Original Message ----- > > From: "Trinidad Mart?n Campos" < trinidadmartinc at gmail.com > > > To: bioconductor at r-project.org > > Sent: Tuesday, November 5, 2013 3:55:08 AM > > Subject: [BioC] Isobar module > > > > Good afternoon, > > > > I am trying to install isobar via Bioconductor and I got this > > message: > > > > Warning message: > > In getDependencies(pkgs, dependencies, available, lib) : > > package ?isobar? is not available > > > > I checked the website and I saw it is available for Linux as well > > so > > I dont > > know where is the problem, can you help me please?? > > > > Thanks a lot > > > > Try and install it as follows: > > source(" http://bioconductor.org/biocLite.R ") > biocLite("isobar") > > If that does not work, please send the output of sessionInfo() to > this list. You may be using a version of R/Bioconductor that is too > old to support the isobar package. > > Dan > > > > Trinidad > > > > [[alternative HTML version deleted]] > > > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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