Question: How to compare GO term lists and create matching network?
6.1 years ago by
biotech • 160
biotech • 160 wrote:
Hi community, I would like to compare three lists of GO terms, coming from an enrichment analysis and create a network figure and some tables with shared GO terms. Since a simple Venn diagram will not take into account possible parent absence in some samples, could someone suggest me the appropriate tool or refer me to a post if this has been previously asked? I've looking this post http://www.biostars.org/p/1277/, but I'm very new to this and don't know where to start. Cytoscape looks promising, specially because its easy to use GUI but I'm also open to new tools, like R/Bioconductor. Does this tool meets my needs? http://baderlab.org/Software/EnrichmentMap Last, I'm working with bacterial data, non-model organism. Thanks for your help. Best, Bernardo -- *Bernardo Bello Ortí* PhD student CReSA-IRTA Campus de Bellaterra-Universitat Autònoma de Barcelona Edifici CReSA 08193 Bellaterra (Barcelona, Spain) Tel.: 647 42 52 63 *www.cresa.es <http: www.cresa.es=""> * [[alternative HTML version deleted]]
ADD COMMENT • link •