Search
Question: GGally ggbio conflict/bug
0
gravatar for Paulson, Ariel
5.0 years ago by
United States
Paulson, Ariel10 wrote:
Library load order does not affect the phenotype? -----Original Message----- From: r-discussion-bounces@listserv.stowers.org [mailto:r-discussion- bounces@listserv.stowers.org] On Behalf Of Cook, Malcolm Sent: Friday, November 08, 2013 5:09 PM To: 'r-discussion at listserv.stowers.org'; 'bioconductor at r-project.org'; 'Tengfei Yin (tengfei.yin at sbgenomics.com)'; 'schloerke at gmail.com' Subject: [R-discussion] GGally ggbio conflict/bug H'lo fellow and prospective users of R libraries GGally/ggbio, both stupendous extensions to the ggplot library, I have an unfortunate interaction to report.... In my hands, loading ggbio on top of GGally causes GGally examples to fail. look see: > library(GGally) Loading required package: ggplot2 Loading required package: reshape Loading required package: plyr Attaching package: 'reshape' The following objects are masked from 'package:plyr': rename, round_any Warning messages: 1: replacing previous import by 'reshape::rename' when loading 'GGally' 2: replacing previous import by 'reshape::round_any' when loading 'GGally' >example(ggpairs) # output excised ... >pm # the plot is pretty # now load the other library: >library(ggbio) The following objects are masked from 'package:ggplot2': geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, xlim > pm # but now I don't get to see the plot because: Error in `$<-`(`*tmp*`, "type", value = "diag") : no method for assigning subsets of this S4 class > My workaround is ... erhm ...egad ... ... don't use ggbio, which, due to other issues with current release (reported seperatlely) I have most unfortunately stopped using anyway. Thanks! What else? ~Malcolm Cook PS. oh, yeah: sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] ggbio_1.10.0 GGally_0.4.4 reshape_0.8.4 plyr_1.8 ggplot2_0.9.3.1 loaded via a namespace (and not attached): [1] AnnotationDbi_1.24.0 Biobase_2.22.0 BiocGenerics_0.8.0 biomaRt_2.18.0 Biostrings_2.30.0 biovizBase_1.10.0 bitops_1.0-6 BSgenome_1.30.0 cluster_1.14.4 colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 digest_0.6.3 GenomicFeatures_1.14.0 GenomicRanges_1.14.3 grid_3.0.2 gridExtra_0.9.1 gtable_0.1.2 Hmisc_3.12-2 IRanges_1.20.4 labeling_0.2 lattice_0.20-24 MASS_7.3-29 munsell_0.4.2 [25] parallel_3.0.2 proto_0.3-10 RColorBrewer_1.0-5 RCurl_1.95-4.1 reshape2_1.2.2 rpart_4.1-3 Rsamtools_1.14.1 RSQLite_0.11.4 rtracklayer_1.22.0 scales_0.2.3 stats4_3.0.2 stringr_0.6.2 tools_3.0.2 VariantAnnotation_1.8.2 XML_3.98-1.1 XVector_0.2.0 zlibbioc_1.8.0 > _______________________________________________ r-discussion mailing list r-discussion at listserv.stowers.org http://listserv.stowers.org/mailman/listinfo/r-discussion
ADD COMMENTlink modified 5.0 years ago by Michael Lawrence10k • written 5.0 years ago by Paulson, Ariel10
0
gravatar for Michael Lawrence
5.0 years ago by
United States
Michael Lawrence10k wrote:
Couple of problems: GGally: needs to import(ggplot2) ggbio: its GGbio object should support $<- (i.e., it should pass through to its ggplot slot) If either one is fixed, the problem is resolved. But both should be. Maintainers: ready, set, fix! ;) Michael On Fri, Nov 8, 2013 at 3:40 PM, Paulson, Ariel <apa@stowers.org> wrote: > Library load order does not affect the phenotype? > > -----Original Message----- > From: r-discussion-bounces@listserv.stowers.org [mailto: > r-discussion-bounces@listserv.stowers.org] On Behalf Of Cook, Malcolm > Sent: Friday, November 08, 2013 5:09 PM > To: 'r-discussion@listserv.stowers.org'; 'bioconductor@r-project.org'; > 'Tengfei Yin (tengfei.yin@sbgenomics.com)'; 'schloerke@gmail.com' > Subject: [R-discussion] GGally ggbio conflict/bug > > H'lo fellow and prospective users of R libraries GGally/ggbio, both > stupendous extensions to the ggplot library, > > I have an unfortunate interaction to report.... > > In my hands, loading ggbio on top of GGally causes GGally examples to fail. > > look see: > > > library(GGally) > Loading required package: ggplot2 > Loading required package: reshape > Loading required package: plyr > > Attaching package: 'reshape' > > The following objects are masked from 'package:plyr': > > rename, round_any > > Warning messages: > 1: replacing previous import by 'reshape::rename' when loading 'GGally' > 2: replacing previous import by 'reshape::round_any' when loading 'GGally' > > >example(ggpairs) > # output excised ... > >pm # the plot is pretty > > # now load the other library: > >library(ggbio) > > The following objects are masked from 'package:ggplot2': > > geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, > xlim > > > pm # but now I don't get to see the plot because: > Error in `$<-`(`*tmp*`, "type", value = "diag") : > no method for assigning subsets of this S4 class > > > > My workaround is ... erhm ...egad ... > > ... don't use ggbio, which, due to other issues with current release > (reported seperatlely) I have most unfortunately stopped using anyway. > > Thanks! > > What else? > > ~Malcolm Cook > > > PS. oh, yeah: > > sessionInfo() > R version 3.0.2 (2013-09-25) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 > LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C > LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices datasets utils methods base > > other attached packages: > [1] ggbio_1.10.0 GGally_0.4.4 reshape_0.8.4 plyr_1.8 > ggplot2_0.9.3.1 > > loaded via a namespace (and not attached): > [1] AnnotationDbi_1.24.0 Biobase_2.22.0 BiocGenerics_0.8.0 > biomaRt_2.18.0 Biostrings_2.30.0 biovizBase_1.10.0 > bitops_1.0-6 BSgenome_1.30.0 cluster_1.14.4 > colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 > digest_0.6.3 GenomicFeatures_1.14.0 GenomicRanges_1.14.3 > grid_3.0.2 gridExtra_0.9.1 gtable_0.1.2 > Hmisc_3.12-2 IRanges_1.20.4 labeling_0.2 > lattice_0.20-24 MASS_7.3-29 munsell_0.4.2 > [25] parallel_3.0.2 proto_0.3-10 RColorBrewer_1.0-5 > RCurl_1.95-4.1 reshape2_1.2.2 rpart_4.1-3 > Rsamtools_1.14.1 RSQLite_0.11.4 rtracklayer_1.22.0 > scales_0.2.3 stats4_3.0.2 stringr_0.6.2 > tools_3.0.2 VariantAnnotation_1.8.2 XML_3.98-1.1 > XVector_0.2.0 zlibbioc_1.8.0 > > > > _______________________________________________ > r-discussion mailing list > r-discussion@listserv.stowers.org > http://listserv.stowers.org/mailman/listinfo/r-discussion > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
ADD COMMENTlink written 5.0 years ago by Michael Lawrence10k
Michael, Thanks for the diagnosis. I'm not up on namespaces in R or I would offer to patch. Meantime, I wonder if there is a workaround.... Guessing, I tried namespaceImport(asNamespace('GGally'),from=asNamespace('ggplot2')) but no dice. Thanks, Malcolm From: Michael Lawrence [mailto:lawrence.michael@gene.com] Sent: Saturday, November 09, 2013 11:38 AM To: Paulson, Ariel Cc: Cook, Malcolm; r-discussion@listserv.stowers.org; bioconductor@r-project.org; Tengfei Yin (tengfei.yin@sbgenomics.com); schloerke@gmail.com Subject: Re: [BioC] GGally ggbio conflict/bug Couple of problems: GGally: needs to import(ggplot2) ggbio: its GGbio object should support $<- (i.e., it should pass through to its ggplot slot) If either one is fixed, the problem is resolved. But both should be. Maintainers: ready, set, fix! ;) Michael On Fri, Nov 8, 2013 at 3:40 PM, Paulson, Ariel <apa@stowers.org<mailto:apa@stowers.org>> wrote: Library load order does not affect the phenotype? -----Original Message----- From: r-discussion-bounces@listserv.stowers.org<mailto:r-discussion- bounces@listserv.stowers.org=""> [mailto:r-discussion- bounces@listserv.stowers.org<mailto:r-discussion- bounces@listserv.stowers.org="">] On Behalf Of Cook, Malcolm Sent: Friday, November 08, 2013 5:09 PM To: 'r-discussion@listserv.stowers.org<mailto:r-discussion@listserv.st owers.org="">'; 'bioconductor@r-project.org<mailto:bioconductor@r-project.org>'; 'Tengfei Yin (tengfei.yin@sbgenomics.com<mailto:tengfei.yin@sbgenomics.com>)'; 'schloerke@gmail.com<mailto:schloerke@gmail.com>' Subject: [R-discussion] GGally ggbio conflict/bug H'lo fellow and prospective users of R libraries GGally/ggbio, both stupendous extensions to the ggplot library, I have an unfortunate interaction to report.... In my hands, loading ggbio on top of GGally causes GGally examples to fail. look see: > library(GGally) Loading required package: ggplot2 Loading required package: reshape Loading required package: plyr Attaching package: 'reshape' The following objects are masked from 'package:plyr': rename, round_any Warning messages: 1: replacing previous import by 'reshape::rename' when loading 'GGally' 2: replacing previous import by 'reshape::round_any' when loading 'GGally' >example(ggpairs) # output excised ... >pm # the plot is pretty # now load the other library: >library(ggbio) The following objects are masked from 'package:ggplot2': geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, xlim > pm # but now I don't get to see the plot because: Error in `$<-`(`*tmp*`, "type", value = "diag") : no method for assigning subsets of this S4 class > My workaround is ... erhm ...egad ... ... don't use ggbio, which, due to other issues with current release (reported seperatlely) I have most unfortunately stopped using anyway. Thanks! What else? ~Malcolm Cook PS. oh, yeah: sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] ggbio_1.10.0 GGally_0.4.4 reshape_0.8.4 plyr_1.8 ggplot2_0.9.3.1 loaded via a namespace (and not attached): [1] AnnotationDbi_1.24.0 Biobase_2.22.0 BiocGenerics_0.8.0 biomaRt_2.18.0 Biostrings_2.30.0 biovizBase_1.10.0 bitops_1.0-6 BSgenome_1.30.0 cluster_1.14.4 colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 digest_0.6.3 GenomicFeatures_1.14.0 GenomicRanges_1.14.3 grid_3.0.2 gridExtra_0.9.1 gtable_0.1.2 Hmisc_3.12-2 IRanges_1.20.4 labeling_0.2 lattice_0.20-24 MASS_7.3-29 munsell_0.4.2 [25] parallel_3.0.2 proto_0.3-10 RColorBrewer_1.0-5 RCurl_1.95-4.1 reshape2_1.2.2 rpart_4.1-3 Rsamtools_1.14.1 RSQLite_0.11.4 rtracklayer_1.22.0 scales_0.2.3 stats4_3.0.2 stringr_0.6.2 tools_3.0.2 VariantAnnotation_1.8.2 XML_3.98-1.1 XVector_0.2.0 zlibbioc_1.8.0 > _______________________________________________ r-discussion mailing list r-discussion@listserv.stowers.org<mailto:r-discussion@listserv.stowers .org=""> http://listserv.stowers.org/mailman/listinfo/r-discussion _______________________________________________ Bioconductor mailing list Bioconductor@r-project.org<mailto:bioconductor@r-project.org> https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]
ADD REPLYlink written 5.0 years ago by Malcolm Cook1.5k
I'll push one this afternoon after class. Sorry for the hassle! Best, Barret On Mon, Nov 11, 2013 at 11:19 AM, Cook, Malcolm <mec@stowers.org> wrote: > Michael, > > > > Thanks for the diagnosis. > > > > I’m not up on namespaces in R or I would offer to patch. > > > > Meantime, I wonder if there is a workaround.... > > > > Guessing, I tried > > > > namespaceImport(asNamespace('GGally'),from=asNamespace('ggplot2')) > > > > but no dice. > > > > Thanks, > > > > Malcolm > > > > *From:* Michael Lawrence [mailto:lawrence.michael@gene.com] > *Sent:* Saturday, November 09, 2013 11:38 AM > *To:* Paulson, Ariel > *Cc:* Cook, Malcolm; r-discussion@listserv.stowers.org; > bioconductor@r-project.org; Tengfei Yin (tengfei.yin@sbgenomics.com); > schloerke@gmail.com > *Subject:* Re: [BioC] GGally ggbio conflict/bug > > > > Couple of problems: > > GGally: needs to import(ggplot2) > > ggbio: its GGbio object should support $<- (i.e., it should pass through > to its ggplot slot) > > If either one is fixed, the problem is resolved. But both should be. > > Maintainers: ready, set, fix! ;) > > Michael > > > > On Fri, Nov 8, 2013 at 3:40 PM, Paulson, Ariel <apa@stowers.org> wrote: > > Library load order does not affect the phenotype? > > -----Original Message----- > From: r-discussion-bounces@listserv.stowers.org [mailto: > r-discussion-bounces@listserv.stowers.org] On Behalf Of Cook, Malcolm > Sent: Friday, November 08, 2013 5:09 PM > To: 'r-discussion@listserv.stowers.org'; 'bioconductor@r-project.org'; > 'Tengfei Yin (tengfei.yin@sbgenomics.com)'; 'schloerke@gmail.com' > Subject: [R-discussion] GGally ggbio conflict/bug > > H'lo fellow and prospective users of R libraries GGally/ggbio, both > stupendous extensions to the ggplot library, > > I have an unfortunate interaction to report.... > > In my hands, loading ggbio on top of GGally causes GGally examples to fail. > > look see: > > > library(GGally) > Loading required package: ggplot2 > Loading required package: reshape > Loading required package: plyr > > Attaching package: 'reshape' > > The following objects are masked from 'package:plyr': > > rename, round_any > > Warning messages: > 1: replacing previous import by 'reshape::rename' when loading 'GGally' > 2: replacing previous import by 'reshape::round_any' when loading 'GGally' > > >example(ggpairs) > # output excised ... > >pm # the plot is pretty > > # now load the other library: > >library(ggbio) > > The following objects are masked from 'package:ggplot2': > > geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, > xlim > > > pm # but now I don't get to see the plot because: > Error in `$<-`(`*tmp*`, "type", value = "diag") : > no method for assigning subsets of this S4 class > > > > My workaround is ... erhm ...egad ... > > ... don't use ggbio, which, due to other issues with current release > (reported seperatlely) I have most unfortunately stopped using anyway. > > Thanks! > > What else? > > ~Malcolm Cook > > > PS. oh, yeah: > > sessionInfo() > R version 3.0.2 (2013-09-25) > Platform: x86_64-unknown-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 > LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C > LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices datasets utils methods base > > other attached packages: > [1] ggbio_1.10.0 GGally_0.4.4 reshape_0.8.4 plyr_1.8 > ggplot2_0.9.3.1 > > loaded via a namespace (and not attached): > [1] AnnotationDbi_1.24.0 Biobase_2.22.0 BiocGenerics_0.8.0 > biomaRt_2.18.0 Biostrings_2.30.0 biovizBase_1.10.0 > bitops_1.0-6 BSgenome_1.30.0 cluster_1.14.4 > colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 > digest_0.6.3 GenomicFeatures_1.14.0 GenomicRanges_1.14.3 > grid_3.0.2 gridExtra_0.9.1 gtable_0.1.2 > Hmisc_3.12-2 IRanges_1.20.4 labeling_0.2 > lattice_0.20-24 MASS_7.3-29 munsell_0.4.2 > [25] parallel_3.0.2 proto_0.3-10 RColorBrewer_1.0-5 > RCurl_1.95-4.1 reshape2_1.2.2 rpart_4.1-3 > Rsamtools_1.14.1 RSQLite_0.11.4 rtracklayer_1.22.0 > scales_0.2.3 stats4_3.0.2 stringr_0.6.2 > tools_3.0.2 VariantAnnotation_1.8.2 XML_3.98-1.1 > XVector_0.2.0 zlibbioc_1.8.0 > > > > _______________________________________________ > r-discussion mailing list > r-discussion@listserv.stowers.org > http://listserv.stowers.org/mailman/listinfo/r-discussion > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > [[alternative HTML version deleted]]
ADD REPLYlink written 5.0 years ago by Barret Schloerke10
Hi Sorry for the late fix. I just fixed it in release branch 1.10.4 ggbio, please update two days later. 1. As Michael suggested, I support $<- and $ for GGbio class 2. But it's more complicated, I override stat_bin and other existing method, and to avoid using proto structure, I use a hack in ggbio, which wrap a call to "+" method for later evaluation which inject the raw data and do transformation, but this conflict with some behavior in ggplot2, so I change the method to behave differently for GGbio + or ggplot + method, and also re-write ggplot generic function, only produce GGbio object when it's not a traditional object for ggplot2. I will update devel branch later soon. cheers Tengfei On Sat, Nov 9, 2013 at 12:37 PM, Michael Lawrence <lawrence.michael@gene.com> wrote: > Couple of problems: > > GGally: needs to import(ggplot2) > ggbio: its GGbio object should support $<- (i.e., it should pass through > to its ggplot slot) > > If either one is fixed, the problem is resolved. But both should be. > > Maintainers: ready, set, fix! ;) > > Michael > > > On Fri, Nov 8, 2013 at 3:40 PM, Paulson, Ariel <apa@stowers.org> wrote: > >> Library load order does not affect the phenotype? >> >> -----Original Message----- >> From: r-discussion-bounces@listserv.stowers.org [mailto: >> r-discussion-bounces@listserv.stowers.org] On Behalf Of Cook, Malcolm >> Sent: Friday, November 08, 2013 5:09 PM >> To: 'r-discussion@listserv.stowers.org'; 'bioconductor@r-project.org'; >> 'Tengfei Yin (tengfei.yin@sbgenomics.com)'; 'schloerke@gmail.com' >> Subject: [R-discussion] GGally ggbio conflict/bug >> >> H'lo fellow and prospective users of R libraries GGally/ggbio, both >> stupendous extensions to the ggplot library, >> >> I have an unfortunate interaction to report.... >> >> In my hands, loading ggbio on top of GGally causes GGally examples to >> fail. >> >> look see: >> >> > library(GGally) >> Loading required package: ggplot2 >> Loading required package: reshape >> Loading required package: plyr >> >> Attaching package: 'reshape' >> >> The following objects are masked from 'package:plyr': >> >> rename, round_any >> >> Warning messages: >> 1: replacing previous import by 'reshape::rename' when loading 'GGally' >> 2: replacing previous import by 'reshape::round_any' when loading 'GGally' >> >> >example(ggpairs) >> # output excised ... >> >pm # the plot is pretty >> >> # now load the other library: >> >library(ggbio) >> >> The following objects are masked from 'package:ggplot2': >> >> geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, >> xlim >> >> > pm # but now I don't get to see the plot because: >> Error in `$<-`(`*tmp*`, "type", value = "diag") : >> no method for assigning subsets of this S4 class >> > >> >> My workaround is ... erhm ...egad ... >> >> ... don't use ggbio, which, due to other issues with current release >> (reported seperatlely) I have most unfortunately stopped using anyway. >> >> Thanks! >> >> What else? >> >> ~Malcolm Cook >> >> >> PS. oh, yeah: >> >> sessionInfo() >> R version 3.0.2 (2013-09-25) >> Platform: x86_64-unknown-linux-gnu (64-bit) >> >> locale: >> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C >> LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 >> LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 >> LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C >> LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C >> >> attached base packages: >> [1] stats graphics grDevices datasets utils methods base >> >> other attached packages: >> [1] ggbio_1.10.0 GGally_0.4.4 reshape_0.8.4 plyr_1.8 >> ggplot2_0.9.3.1 >> >> loaded via a namespace (and not attached): >> [1] AnnotationDbi_1.24.0 Biobase_2.22.0 BiocGenerics_0.8.0 >> biomaRt_2.18.0 Biostrings_2.30.0 biovizBase_1.10.0 >> bitops_1.0-6 BSgenome_1.30.0 cluster_1.14.4 >> colorspace_1.2-4 DBI_0.2-7 dichromat_2.0-0 >> digest_0.6.3 GenomicFeatures_1.14.0 GenomicRanges_1.14.3 >> grid_3.0.2 gridExtra_0.9.1 gtable_0.1.2 >> Hmisc_3.12-2 IRanges_1.20.4 labeling_0.2 >> lattice_0.20-24 MASS_7.3-29 munsell_0.4.2 >> [25] parallel_3.0.2 proto_0.3-10 RColorBrewer_1.0-5 >> RCurl_1.95-4.1 reshape2_1.2.2 rpart_4.1-3 >> Rsamtools_1.14.1 RSQLite_0.11.4 rtracklayer_1.22.0 >> scales_0.2.3 stats4_3.0.2 stringr_0.6.2 >> tools_3.0.2 VariantAnnotation_1.8.2 XML_3.98-1.1 >> XVector_0.2.0 zlibbioc_1.8.0 >> > >> >> _______________________________________________ >> r-discussion mailing list >> r-discussion@listserv.stowers.org >> http://listserv.stowers.org/mailman/listinfo/r-discussion >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- Tengfei Yin, PhD Seven Bridges Genomics sbgenomics.com 625 Mt. Auburn St. Suite #208 Cambridge, MA 02138 (617) 866-0446 [[alternative HTML version deleted]]
ADD REPLYlink written 5.0 years ago by Tengfei Yin490
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 393 users visited in the last hour