combination of frma, combat and barcode methods
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@raquel-martinez-garcia-4065
Last seen 7.2 years ago
Dear all, I combine frma and combat to analyze gene expression data. Would be a good idea to use barcode method with the combat results? Thanks in advance Raquel **NOTA DE CONFIDENCIALIDAD** Este correo electr?nico, y ...{{dropped:3}}
frma frma • 745 views
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@matthew-mccall-4459
Last seen 2.4 years ago
United States
Raquel, My guess would be no. But you could do frma then convert to barcode z-scores then apply combat. Or frma then binary barcode may work without combat depending on the magnitude of the batch effects in your data. Best, Matt On Nov 26, 2013 6:19 AM, "Martinez.Raquel" <rmartinezg@cnio.es> wrote: > Dear all, > I combine frma and combat to analyze gene expression data. > Would be a good idea to use barcode method with the combat results? > > Thanks in advance > Raquel > > **NOTA DE CONFIDENCIALIDAD** Este correo electrónico, y ...{{dropped:3}} > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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