How to make Oryza sativa genome database in R package. -- output of sessionInfo(): How to make Oryza sativa genome database in R package. -- Sent via the guest posting facility at bioconductor.org.

Dear Abhishek, Please be more precise in your question. Using the search functionality on the Bioconductor website I pointed you to offline already gives some - I believe - interesting results; see http://www.bioconductor.org/help/search/index.html?q=oryza As to the output of sessionInfo(), please run the sessionInfo command in your R session. The output will look something like: > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=C LC_COLLATE=C LC_MONETARY=C LC_MESSAGES=C LC_PAPER=C LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=C LC_IDENTIFICATION=C attached base packages: [1] parallel stats graphics grDevices utils datasets methods base other attached packages: [1] LSD_2.5 ellipse_0.3-8 schoolmath_0.4 colorRamps_2.3 gtools_3.1.0 MASS_7.3-29 scatterplot3d_0.3-33 vsn_3.30.0 [9] Biobase_2.22.0 RColorBrewer_1.0-5 DESeq2_1.2.1 RcppArmadillo_0.3.920.1 Rcpp_0.10.5 GenomicRanges_1.14.0 XVector_0.2.0 IRanges_1.20.0 [17] BiocGenerics_0.8.0 loaded via a namespace (and not attached): [1] AnnotationDbi_1.24.0 BiocInstaller_1.12.0 DBI_0.2-7 RSQLite_0.11.4 XML_3.98-1.1 affy_1.40.0 affyio_1.30.0 annotate_1.40.0 genefilter_1.44.0 [10] grid_3.0.2 lattice_0.20-24 limma_3.18.0 locfit_1.5-9.1 preprocessCore_1.24.0 splines_3.0.2 stats4_3.0.2 survival_2.37-4 tools_3.0.2 [19] xtable_1.7-1 zlibbioc_1.8.0 --------------------------------------------------------------- Nicolas Delhomme Genome Biology Computational Support European Molecular Biology Laboratory Tel: +49 6221 387 8310 Email: nicolas.delhomme at embl.de Meyerhofstrasse 1 - Postfach 10.2209 69102 Heidelberg, Germany --------------------------------------------------------------- On 11 Dec 2013, at 05:59, abhishek singh chauhan [guest] <guest at="" bioconductor.org=""> wrote: > > How to make Oryza sativa genome database in R package. > > -- output of sessionInfo(): > > How to make Oryza sativa genome database in R package. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor --------------------------------------------------------------- Nicolas Delhomme Nathaniel Street Lab Department of Plant Physiology Ume? Plant Science Center Tel: +46 90 786 7989 Email: nicolas.delhomme at plantphys.umu.se SLU - Ume? universitet Ume? S-901 87 Sweden