Question: simultaneous use of robust and weighting methods in limma.
2
gravatar for Richard Friedman
5.5 years ago by
Richard Friedman80 wrote:

Dear List,

Should arrayweights, eBayes(robust=TRUE), and lmFit(...,method="robust") be used simultanenously in Limma? If not should any combination be used together?

Thanks and best wishes,
Rich
Richard A. Friedman, PhD
Associate Research Scientist,
Biomedical Informatics Shared Resource
Herbert Irving Comprehensive Cancer Center (HICCC)
Lecturer,
Department of Biomedical Informatics (DBMI)
Educational Coordinator,
Center for Computational Biology and Bioinformatics (C2B2)/
National Center for Multiscale Analysis of Genomic Networks (MAGNet)/
Columbia Department of Systems Biology
Room 824
Irving Cancer Research Center
Columbia University
1130 St. Nicholas Ave
New York, NY 10032
(212)851-4765 (voice)
friedman at c2b2.columbia.edu
http://friedman.c2b2.columbia.edu/

In memoriam, Frederik Pohl

limma robust arrayweights • 628 views
ADD COMMENTlink modified 4.5 years ago by Gordon Smyth37k • written 5.5 years ago by Richard Friedman80
Answer: simultaneous use of robust and weighting methods in limma.
2
gravatar for Gordon Smyth
4.5 years ago by
Gordon Smyth37k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth37k wrote:

See simultaneous use of robust and weighting methods in limma for an answer

ADD COMMENTlink modified 4.5 years ago • written 4.5 years ago by Gordon Smyth37k
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