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Last seen 9.6 years ago
I have already posted this once but I really haven't found a solution
yet. Every time I try to normalize my data, the norm.factors I get
back are NaN. I have succeeded at normalization before with a
different data set. The data, to explain, are replicates of SI at
different time points. I need to normalize using the TMM (default
method). I have copied and pasted my session below. Thanks so much!
> library(edgeR)
Loading required package: limma
> targets <- read.delim("/users/Audra/desktop/targets.txt")
> targets
files
1 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_0h_31_lane2_pRNA-A_10_1 trimmed RNA-Seq.txt
2 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_0H_42_lane2_pRNA-A_17_1 trimmed RNA-Seq.txt
3 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_0h_47_lane2_pRNA-A_20_1 trimmed RNA-Seq.txt
4
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AI6_HiSeq_3_2011_s1_bar_K
trimmed RNA-Seq.txt
5
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AJ6_HiSeq_3_2011_s1_bar_B
trimmed RNA-Seq.txt
6 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Ai8_0h_37_lane2_pRNA-A_14_1 trimmed RNA-Seq.txt
7 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Ai11_0h_11_lane3_pRNA-B_3_1 trimmed RNA-Seq.txt
8 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_U25_0h_33_lane2_pRNA-A_11_1 trimmed RNA-Seq.txt
9 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_0h_AF2_June2011_50SR_s_3_SS02.txt.s14_bar_C trimmed RNA-Seq.txt
10 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_10d_W22_June2011_50SR_s_3_SS02.txt.s21_bar_L trimmed RNA-Seq.txt
11 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_12h_Ak4_June2011_50SR_s_2_SS01.txt.s10_bar_O trimmed RNA-Seq.txt
12 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_12h_Ak10_June2011_50SR_s_2_SS01.txt.s12_bar_S trimmed RNA-Seq.txt
13 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_1h_2_lane2_pRNA-A_1_1-1 trimmed RNA-Seq.txt
14 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_1h_35_lane3_pRNA-B_17_1 trimmed RNA-Seq.txt
15 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_1h_48_lane3_pRNA-B_20_1 trimmed RNA-Seq.txt
16 /users/Audra/desktop/SI_Tabdelim_for_R/Si_24h_Z12
_HiSeq_3_2011_s1_bar_N trimmed RNA-Seq.txt
17 /users/Audra/desktop/SI_Tabdelim_for_R/Si_24h_Z14_Jan_2011_
PE120_SP03_s_7_1_bar_C trimmed RNA-Seq.txt
18 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_V43_24h_26_lane3_pRNA-B_12_1 trimmed RNA-Seq.txt
19 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Z18_24h_10_lane3_pRNA-B_2_1 trimmed RNA-Seq.txt
20 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_24h_W20_June2011_50SR_s_3_SS02.txt.s16_bar_F trimmed RNA-Seq.txt
21 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
B_24h_S6_June2011_50SR_s_3_SS02.txt.s17_bar_G trimmed RNA-Seq.txt
22 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_2h_3_lane2_pRNA-A_2_1-1 trimmed RNA-Seq.txt
23 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_2h_39_lane3_pRNA-B_18_1 trimmed RNA-Seq.txt
24 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_2h_23_lane3_pRNA-B_11_1 trimmed RNA-Seq.txt
25 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_4h_4_lane2_pRNA-A_3_1 trimmed RNA-Seq.txt
26 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_4h_40_lane2_pRNA-A_16_1 trimmed RNA-Seq.txt
27 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_4h_45_lane2_pRNA-A_18_1 trimmed RNA-Seq.txt
28 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_4h_24_lane2_pRNA-A_8_1 trimmed RNA-Seq.txt
29 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_6h_41_lane3_pRNA-B_19_1 trimmed RNA-Seq.txt
30 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_6h_46_lane2_pRNA-A_19_1 trimmed RNA-Seq.txt
31 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_6h_7_lane2_pRNA-A_4_1-1 trimmed RNA-Seq.txt
32 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_6h_AJ7_June2011_50SR_s_2_SS01.txt.s4_bar_F trimmed RNA-Seq.txt
33 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_6h_Ak25_June2011_50SR_s_2_SS01.txt.s6_bar_H trimmed RNA-Seq.txt
34
/users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y5_HiSeq_3_2011_s1_bar_E
trimmed RNA-Seq.txt
35 /users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y18_May2011_120P
E_s_3_1_TC05.txt.bar_F trimmed RNA-Seq.txt
36 /users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y23_Jan_2011_
PE120_SP03_s_7_1_bar_G trimmed RNA-Seq.txt
37 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Y24_96h_5_lane3_pRNA-B_1_1 trimmed RNA-Seq.txt
38 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_96h_V40_June2011_50SR_s_3_SS02.txt.s19_bar_J trimmed RNA-Seq.txt
group description
1 0h Prox SI
2 0h Prox SI
3 0h Prox SI
4 0h Si
5 0h Si
6 0h Si
7 0h Si
8 0h Si
9 0h Si
10 10d Si
11 12h Si
12 12h Si
13 1h Prox SI
14 1h Prox SI
15 1h Prox SI
16 24h Si
17 24h Si
18 24h Si
19 24h Si
20 24h Si
21 24h Si
22 2h Prox SI
23 2h Prox SI
24 2h Prox SI
25 4h Prox SI
26 4h Prox SI
27 4h Prox SI
28 4h Prox SI
29 6h Prox SI
30 6h Prox SI
31 6h Prox SI
32 6h Si
33 6h Si
34 96h Si
35 96h Si
36 96h Si
37 96h Si
38 96h Si
> d <- readDGE(targets)
> d
An object of class "DGEList"
$samples
files
1 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak2_0h_31_lane2_pRNA-
A_10_1 trimmed RNA-Seq.txt
2 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak5_0H_42_lane2_pRNA-
A_17_1 trimmed RNA-Seq.txt
3 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak8_0h_47_lane2_pRNA-
A_20_1 trimmed RNA-Seq.txt
4
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AI6_HiSeq_3_2011_s1_bar_K
trimmed RNA-Seq.txt
5
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AJ6_HiSeq_3_2011_s1_bar_B
trimmed RNA-Seq.txt
group description lib.size norm.factors
1 0h Prox SI 374815 1
2 0h Prox SI 747066 1
3 0h Prox SI 168922 1
4 0h Si 1503428 1
5 0h Si 3945244 1
33 more rows ...
$counts
1
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
23
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
2
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
30
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
26
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
3
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
11
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
4
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1165
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
28
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
5
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1122
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
67
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
6
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
448
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
9
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
7
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1452
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
8
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
322
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
8
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
9
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
33
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
10
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
1
10
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
38
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
11
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
218
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 9
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
12
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
11
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
13
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
9
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
14
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
90
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
15
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
0
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
16
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
937
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
31
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 6
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
1
17
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1200
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
43
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
18
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
99
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
6
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
19
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
715
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
13
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
20
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
30
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
11
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
21
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
21
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 12
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
22
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
8
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
23
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
66
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
15
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
24
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
12
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
4
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
25
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
63
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
13
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
2
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
26
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
17
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
8
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
27
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
21
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
28
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
25
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
29
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
54
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
11
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
30
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
12
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
31
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
13
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
3
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
2
32
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
277
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
33
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
148
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
34
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
2172
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
17
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 17
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
35
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1535
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
26
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 13
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
36
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1508
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
41
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
37
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
562
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
34
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
38
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
62
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
9
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
3
50765 more rows ...
> d$samples
files
1 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_0h_31_lane2_pRNA-A_10_1 trimmed RNA-Seq.txt
2 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_0H_42_lane2_pRNA-A_17_1 trimmed RNA-Seq.txt
3 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_0h_47_lane2_pRNA-A_20_1 trimmed RNA-Seq.txt
4
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AI6_HiSeq_3_2011_s1_bar_K
trimmed RNA-Seq.txt
5
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AJ6_HiSeq_3_2011_s1_bar_B
trimmed RNA-Seq.txt
6 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Ai8_0h_37_lane2_pRNA-A_14_1 trimmed RNA-Seq.txt
7 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Ai11_0h_11_lane3_pRNA-B_3_1 trimmed RNA-Seq.txt
8 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_U25_0h_33_lane2_pRNA-A_11_1 trimmed RNA-Seq.txt
9 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_0h_AF2_June2011_50SR_s_3_SS02.txt.s14_bar_C trimmed RNA-Seq.txt
10 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_10d_W22_June2011_50SR_s_3_SS02.txt.s21_bar_L trimmed RNA-Seq.txt
11 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_12h_Ak4_June2011_50SR_s_2_SS01.txt.s10_bar_O trimmed RNA-Seq.txt
12 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_12h_Ak10_June2011_50SR_s_2_SS01.txt.s12_bar_S trimmed RNA-Seq.txt
13 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_1h_2_lane2_pRNA-A_1_1-1 trimmed RNA-Seq.txt
14 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_1h_35_lane3_pRNA-B_17_1 trimmed RNA-Seq.txt
15 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_1h_48_lane3_pRNA-B_20_1 trimmed RNA-Seq.txt
16 /users/Audra/desktop/SI_Tabdelim_for_R/Si_24h_Z12
_HiSeq_3_2011_s1_bar_N trimmed RNA-Seq.txt
17 /users/Audra/desktop/SI_Tabdelim_for_R/Si_24h_Z14_Jan_2011_
PE120_SP03_s_7_1_bar_C trimmed RNA-Seq.txt
18 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_V43_24h_26_lane3_pRNA-B_12_1 trimmed RNA-Seq.txt
19 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Z18_24h_10_lane3_pRNA-B_2_1 trimmed RNA-Seq.txt
20 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_24h_W20_June2011_50SR_s_3_SS02.txt.s16_bar_F trimmed RNA-Seq.txt
21 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
B_24h_S6_June2011_50SR_s_3_SS02.txt.s17_bar_G trimmed RNA-Seq.txt
22 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_2h_3_lane2_pRNA-A_2_1-1 trimmed RNA-Seq.txt
23 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_2h_39_lane3_pRNA-B_18_1 trimmed RNA-Seq.txt
24 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_2h_23_lane3_pRNA-B_11_1 trimmed RNA-Seq.txt
25 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ai24_4h_4_lane2_pRNA-A_3_1 trimmed RNA-Seq.txt
26 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_4h_40_lane2_pRNA-A_16_1 trimmed RNA-Seq.txt
27 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_4h_45_lane2_pRNA-A_18_1 trimmed RNA-Seq.txt
28 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_4h_24_lane2_pRNA-A_8_1 trimmed RNA-Seq.txt
29 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak2_6h_41_lane3_pRNA-B_19_1 trimmed RNA-Seq.txt
30 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak5_6h_46_lane2_pRNA-A_19_1 trimmed RNA-Seq.txt
31 /users/Audra/desktop/SI_Tabdelim_for_R
/Prox_SI_Ak8_6h_7_lane2_pRNA-A_4_1-1 trimmed RNA-Seq.txt
32 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_6h_AJ7_June2011_50SR_s_2_SS01.txt.s4_bar_F trimmed RNA-Seq.txt
33 /users/Audra/desktop/SI_Tabdelim_for_R/SI-
A_6h_Ak25_June2011_50SR_s_2_SS01.txt.s6_bar_H trimmed RNA-Seq.txt
34
/users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y5_HiSeq_3_2011_s1_bar_E
trimmed RNA-Seq.txt
35 /users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y18_May2011_120P
E_s_3_1_TC05.txt.bar_F trimmed RNA-Seq.txt
36 /users/Audra/desktop/SI_Tabdelim_for_R/Si_96h_Y23_Jan_2011_
PE120_SP03_s_7_1_bar_G trimmed RNA-Seq.txt
37 /users/Audra/desktop/SI_Tabdelim_for_R
/SI_Y24_96h_5_lane3_pRNA-B_1_1 trimmed RNA-Seq.txt
38 /users/Audra/desktop/SI_Tabdelim_for_R/Si-
A_96h_V40_June2011_50SR_s_3_SS02.txt.s19_bar_J trimmed RNA-Seq.txt
group description lib.size norm.factors
1 0h Prox SI 374815 1
2 0h Prox SI 747066 1
3 0h Prox SI 168922 1
4 0h Si 1503428 1
5 0h Si 3945244 1
6 0h Si 796503 1
7 0h Si 1110495 1
8 0h Si 369702 1
9 0h Si 945932 1
10 10d Si 478680 1
11 12h Si 930415 1
12 12h Si 34830 1
13 1h Prox SI 177704 1
14 1h Prox SI 830511 1
15 1h Prox SI 896926 1
16 24h Si 1926498 1
17 24h Si 3401008 1
18 24h Si 673436 1
19 24h Si 592641 1
20 24h Si 1270874 1
21 24h Si 1271765 1
22 2h Prox SI 238914 1
23 2h Prox SI 930402 1
24 2h Prox SI 854939 1
25 4h Prox SI 751449 1
26 4h Prox SI 264237 1
27 4h Prox SI 1540281 1
28 4h Prox SI 1637729 1
29 6h Prox SI 552252 1
30 6h Prox SI 71195 1
31 6h Prox SI 1522576 1
32 6h Si 873977 1
33 6h Si 1611862 1
34 96h Si 1900171 1
35 96h Si 2088219 1
36 96h Si 1009910 1
37 96h Si 865353 1
38 96h Si 500564 1
> summary(d$counts)
1 2 3
Min. : 0.000 Min. : 0.00 Min. : 0.000
1st Qu.: 0.000 1st Qu.: 0.00 1st Qu.: 0.000
Median : 0.000 Median : 0.00 Median : 0.000
Mean : 7.383 Mean : 14.71 Mean : 3.327
3rd Qu.: 1.000 3rd Qu.: 1.00 3rd Qu.: 0.000
Max. :20468.000 Max. :20880.00 Max. :7082.000
4 5 6
Min. : 0.00 Min. : 0.00 Min. : 0.00
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00
Median : 0.00 Median : 0.00 Median : 0.00
Mean : 29.61 Mean : 77.71 Mean : 15.69
3rd Qu.: 2.00 3rd Qu.: 0.00 3rd Qu.: 1.00
Max. :85570.00 Max. :113242.00 Max. :26749.00
7 8 9
Min. : 0.00 Min. : 0.000 Min. : 0.00
1st Qu.: 0.00 1st Qu.: 0.000 1st Qu.: 0.00
Median : 0.00 Median : 0.000 Median : 0.00
Mean : 21.87 Mean : 7.282 Mean : 18.63
3rd Qu.: 0.00 3rd Qu.: 1.000 3rd Qu.: 1.00
Max. :30148.00 Max. :8501.000 Max. :32736.00
10 11 12 13
Min. : 0.000 Min. : 0.00 Min. : 0.000 Min. :
0.0
1st Qu.: 0.000 1st Qu.: 0.00 1st Qu.: 0.000 1st Qu.:
0.0
Median : 0.000 Median : 0.00 Median : 0.000 Median :
0.0
Mean : 9.428 Mean : 18.33 Mean : 0.686 Mean :
3.5
3rd Qu.: 0.000 3rd Qu.: 1.00 3rd Qu.: 0.000 3rd Qu.:
0.0
Max. :19060.000 Max. :42038.00 Max. :997.000 Max.
:8224.0
14 15 16
Min. : 0.00 Min. : 0.00 Min. : 0.00
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00
Median : 0.00 Median : 0.00 Median : 0.00
Mean : 16.36 Mean : 17.67 Mean : 37.95
3rd Qu.: 2.00 3rd Qu.: 1.00 3rd Qu.: 2.00
Max. :41561.00 Max. :25430.00 Max. :48180.00
17 18 19
Min. : 0.00 Min. : 0.00 Min. : 0.00
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00
Median : 0.00 Median : 0.00 Median : 0.00
Mean : 66.99 Mean : 13.26 Mean : 11.67
3rd Qu.: 1.00 3rd Qu.: 1.00 3rd Qu.: 1.00
Max. :101736.00 Max. :17818.00 Max. :14039.00
20 21 22
Min. : 0.00 Min. : 0.00 Min. : 0.000
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.000
Median : 0.00 Median : 0.00 Median : 0.000
Mean : 25.03 Mean : 25.05 Mean : 4.706
3rd Qu.: 1.00 3rd Qu.: 1.00 3rd Qu.: 0.000
Max. :54657.00 Max. :34765.00 Max. :10297.000
23 24 25 26
Min. : 0.00 Min. : 0.00 Min. : 0.0 Min. :
0.000
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.0 1st Qu.:
0.000
Median : 0.00 Median : 0.00 Median : 0.0 Median :
0.000
Mean : 18.33 Mean : 16.84 Mean : 14.8 Mean :
5.205
3rd Qu.: 2.00 3rd Qu.: 1.00 3rd Qu.: 1.0 3rd Qu.:
1.000
Max. :44889.00 Max. :28549.00 Max. :26033.0 Max.
:14323.000
27 28 29 30
Min. : 0.00 Min. : 0.00 Min. : 0.00 Min. :
0.000
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.:
0.000
Median : 0.00 Median : 0.00 Median : 0.00 Median :
0.000
Mean : 30.34 Mean : 32.26 Mean : 10.88 Mean :
1.402
3rd Qu.: 2.00 3rd Qu.: 2.00 3rd Qu.: 1.00 3rd Qu.:
0.000
Max. :40600.00 Max. :53032.00 Max. :24632.00 Max.
:5736.000
31 32 33 34
Min. : 0.00 Min. : 0.00 Min. : 0.00 Min. :
0.00
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.:
0.00
Median : 0.00 Median : 0.00 Median : 0.00 Median :
0.00
Mean : 29.99 Mean : 17.21 Mean : 31.75 Mean :
37.43
3rd Qu.: 2.00 3rd Qu.: 1.00 3rd Qu.: 2.00 3rd Qu.:
1.00
Max. :47530.00 Max. :18676.00 Max. :54499.00 Max.
:59323.00
35 36 37
Min. : 0.00 Min. : 0.00 Min. : 0.00
1st Qu.: 0.00 1st Qu.: 0.00 1st Qu.: 0.00
Median : 0.00 Median : 0.00 Median : 0.00
Mean : 41.13 Mean : 19.89 Mean : 17.04
3rd Qu.: 3.00 3rd Qu.: 0.00 3rd Qu.: 1.00
Max. :60187.00 Max. :30252.00 Max. :38192.00
38
Min. : 0.000
1st Qu.: 0.000
Median : 0.000
Mean : 9.859
3rd Qu.: 1.000
Max. :10764.000
> d <- calcNormFactors(d)
> d
An object of class "DGEList"
$samples
files
1 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak2_0h_31_lane2_pRNA-
A_10_1 trimmed RNA-Seq.txt
2 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak5_0H_42_lane2_pRNA-
A_17_1 trimmed RNA-Seq.txt
3 /users/Audra/desktop/SI_Tabdelim_for_R/Prox_SI_Ak8_0h_47_lane2_pRNA-
A_20_1 trimmed RNA-Seq.txt
4
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AI6_HiSeq_3_2011_s1_bar_K
trimmed RNA-Seq.txt
5
/users/Audra/desktop/SI_Tabdelim_for_R/Si_0h_AJ6_HiSeq_3_2011_s1_bar_B
trimmed RNA-Seq.txt
group description lib.size norm.factors
1 0h Prox SI 374815 NaN
2 0h Prox SI 747066 NaN
3 0h Prox SI 168922 NaN
4 0h Si 1503428 NaN
5 0h Si 3945244 NaN
33 more rows ...
$counts
1
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
23
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
2
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
30
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
26
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
3
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
11
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
4
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1165
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
28
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
5
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1122
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
67
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
6
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
448
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
9
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
7
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1452
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
8
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
322
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
8
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
9
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
33
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
10
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
1
10
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
38
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
11
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
218
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 9
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
12
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
11
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
13
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
9
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
14
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
90
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
15
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
0
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
16
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
937
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
31
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 6
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
1
17
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1200
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
43
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
18
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
99
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
6
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
19
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
715
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
13
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
20
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
30
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
11
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
21
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
21
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 12
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
22
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
8
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
23
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
66
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
15
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
24
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
12
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
4
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
25
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
63
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
13
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
2
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
26
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
17
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
8
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
27
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
21
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
2
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 2
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
28
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
25
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
29
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
54
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
11
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
30
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
12
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
0
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
31
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
13
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
3
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
1
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
2
32
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
277
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
7
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
33
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
148
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
5
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 4
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
34
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
2172
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
17
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 17
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
35
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1535
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
26
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 13
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
36
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
1508
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
41
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 1
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
37
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
562
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
34
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 3
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
0
38
maker-Contig6333-snap-gene-0.47-mRNA-1 transcript Name:"Similar to
MYH11 Myosin-11 (Gallus gallus)" offset:0 AED:0.15 eAED:0.15
QI:0|0.89|0.82|1|0.71|0.72|40|470|
62
maker-Contig6333-snap-gene-0.51-mRNA-1 transcript Name:"Similar to
NDE1 Nuclear distribution protein nudE homolog 1 (Gallus gallus)"
offset:46 AED:0.16 eAED:0.16 QI:46|1|1|1|0.42|0.75|8|1603|
9
maker-Contig1111-pred_gff_snap_masked-gene-1.0-mRNA-1 transcript
Name:"Similar to APBB2 Amyloid beta A4 precursor protein-binding
family B member 2 (Homo sapiens)" offset:0 AED:1.00 eAED:1.00
QI:0|0|0|0|1|1|3|0| 0
maker-Contig3008-pred_gff_snap_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to dip2ba Disco-interacting protein 2 homolog B-A (Danio
rerio)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|6|0|
0
maker-Contig11328-pred_gff_augustus_masked-gene-0.0-mRNA-1 transcript
Name:"Similar to T-cell receptor alpha chain V region PY14 (Homo
sapiens)" offset:0 AED:1.00 eAED:1.00 QI:0|0|0|0|1|1|3|0|
3
50765 more rows ...
>
-- output of sessionInfo():
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.4.2 limma_3.18.6
--
Sent via the guest posting facility at bioconductor.org.
