Question: RCircos 2D track plot for a small region of genome
5.9 years ago by
Guest User • 12k
Guest User • 12k wrote:
Hi I???ve been working with the R package RCircos for a short while. I???d like to make Circos 2D track plot localized to a small region of genome (say 700kb-800kb on chr1). Does anyone know how this can be done? -Mark -- output of sessionInfo(): R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  splines grid parallel stats graphics grDevices utils datasets methods base other attached packages:  rtracklayer_1.22.0 Rsamtools_1.14.2 RCircos_1.1.2 BSgenome.Hsapiens.UCSC.hg18_1.3.19  BSgenome_1.30.0 Biostrings_2.30.1 faraway_1.0.5 plyr_1.8  pscl_1.04.4 vcd_1.3-1 gam_1.09 coda_0.16-1  mvtnorm_0.9-9996 MASS_7.3-29 Hmisc_3.13-0 Formula_1.1-1  survival_2.37-4 lattice_0.20-24 cluster_1.14.4 GenomicRanges_1.14.4  XVector_0.2.0 IRanges_1.20.6 BiocGenerics_0.8.0 Matrix_1.1-1.1 loaded via a namespace (and not attached):  bitops_1.0-6 colorspace_1.2-4 RCurl_1.95-4.1 stats4_3.0.2 tools_3.0.2 XML_3.95-0.2 zlibbioc_1.8.0 -- Sent via the guest posting facility at bioconductor.org.
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