Question: BSgenomes pig
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gravatar for Miskey, Csaba
5.3 years ago by
Germany
Miskey, Csaba20 wrote:
Dear Herve, I would like to kindly request the pig genome for the BSgenome package. I would appreciate your help. Best, Csaba [[alternative HTML version deleted]]
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ADD COMMENTlink modified 5.3 years ago by Hervé Pagès ♦♦ 13k • written 5.3 years ago by Miskey, Csaba20
Answer: BSgenomes pig
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gravatar for Hervé Pagès
5.3 years ago by
Hervé Pagès ♦♦ 13k
United States
Hervé Pagès ♦♦ 13k wrote:
Hi Csaba, You didn't say which assembly/files you want this BSgenome package to be based on. I just made one for susScr3 (latest assembly for pig available at UCSC), hope that's OK: http://genome.ucsc.edu/cgi-bin/hgGateway?clade=mammal&org=Pig I also made one for the masked genome. The 2 packages are: BSgenome.Sscrofa.UCSC.susScr3 BSgenome.Sscrofa.UCSC.susScr3.masked They'll become available via biocLite() for BioC devel users only in a couple of hours. Only the source packages will be available for now (but you should be able to install them on Windows or Mac with biocLite("<pkgname>", type="source")). Please let me know if you have any question or concern about this. Cheers, H. On 02/05/2014 04:46 AM, Miskey, Csaba wrote: > Dear Herve, > > I would like to kindly request the pig genome for the BSgenome package. > I would appreciate your help. > > Best, > Csaba > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
ADD COMMENTlink written 5.3 years ago by Hervé Pagès ♦♦ 13k
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