Hi Mike, Just a quick question. I am having problem downloading DESeq2_1.3.44.tar.gz using the gz folder. I am using R studio version 3.0.2. Here's the error message I received: * installing *source* package 'DESeq2' ... ** libs *** arch - i386 ERROR: compilation failed for package 'DESeq2' * removing 'C:/Users/yfy/Documents/R/win-library/3.0/DESeq2' Warning in install.packages : running command '"C:/PROGRA~1/R/R-30~1.2/bin/x64/R" CMD INSTALL -l "C:\Users\yfy\Documents\R\win-library\3.0" "C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz"' had status 1 Warning in install.packages : installation of package ???C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz??? had non-zero exit status When I tried installing using the command lines, version 1.2.10 was installed. Is the 1.3 version ready for installation? Many thanks, Yoong -- output of sessionInfo(): N/A -- Sent via the guest posting facility at bioconductor.org.

hi Yoong, Installing the development version of Bioconductor packages (in which the version number y of x.y.z is an odd number) is not so easy. You first need to install the development version of R. This can cause conflicts with your release version of R. See for example this thread here: https://stat.ethz.ch/pipermail/bioconductor/2014-January/057198.html Note though that the development DESeq2 version will be released in ~1 month: http://bioconductor.org/developers/release-schedule/ Mike On Thu, Mar 6, 2014 at 11:06 AM, Yoong [guest] <guest@bioconductor.org>wrote: > > Hi Mike, > > Just a quick question. I am having problem downloading > DESeq2_1.3.44.tar.gz using the gz folder. I am using R studio version > 3.0.2. Here's the error message I received: > * installing *source* package 'DESeq2' ... > ** libs > > *** arch - i386 > ERROR: compilation failed for package 'DESeq2' > * removing 'C:/Users/yfy/Documents/R/win-library/3.0/DESeq2' > Warning in install.packages : > running command '"C:/PROGRA~1/R/R-30~1.2/bin/x64/R" CMD INSTALL -l > "C:\Users\yfy\Documents\R\win-library\3.0" > "C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz"' had status 1 > Warning in install.packages : > installation of package ‘C:/Users/yfy/Downloads/DESeq2_1.3.44.tar.gz’ > had non-zero exit status > > > When I tried installing using the command lines, version 1.2.10 was > installed. Is the 1.3 version ready for installation? > > Many thanks, > Yoong > > -- output of sessionInfo(): > > N/A > > -- > Sent via the guest posting facility at bioconductor.org. > [[alternative HTML version deleted]]