Answer: Is there any package for meta eqtl?
5.7 years ago by
if, by "meta eqtl" you mean metaanalysis of eqtl associations, a crude
approach is available. given a set of smlSets from different
meqtlTests will harmonize the loci by name and compute the sum of
association statistics across the populations. the ultimate results
the same size as a single analysis. this particular approach has not
gotten much mileage lately as we tend to do the separate analyses and
combine later, now that we have sufficient disk. if you run into
you can contact me directly.
function (listOfSmls, rhslist, runname = "mfoo", targdir = "mfoo",
geneApply = lapply, shortfac = 100, checkValid = TRUE,
glmfamily = "gaussian")
On Tue, Mar 18, 2014 at 2:16 PM, Fabrice Tourre
> Dear expert,
> I knew GGtools can do eqtl search. But I want a package to do meta
> eqtl. Because I cannot store all the output from the eqtl. I cannot
> two eQTL separately, then combined them.
> Thank you very much in advance.
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