recommend package for exon array analysis
2
0
Entering edit mode
Guest User ★ 13k
@guest-user-4897
Last seen 9.6 years ago
Dear Community, I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. Best. -- output of sessionInfo(): I am using R 3.0.1 in MacOSX. -- Sent via the guest posting facility at bioconductor.org.
PROcess PROcess • 1.2k views
ADD COMMENT
0
Entering edit mode
Paul Geeleher ★ 1.3k
@paul-geeleher-2679
Last seen 9.6 years ago
Check out in this paper: http://bib.oxfordjournals.org/content/12/6/634.long Paul. On Tue, Mar 18, 2014 at 3:21 PM, Dli [guest] <guest at="" bioconductor.org=""> wrote: > > Dear Community, > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. > > Best. > > -- output of sessionInfo(): > > I am using R 3.0.1 in MacOSX. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Dr. Paul Geeleher, PhD Section of Hematology-Oncology Department of Medicine The University of Chicago 900 E. 57th St., KCBD, Room 7144 Chicago, IL 60637 -- www.bioinformaticstutorials.com
ADD COMMENT
0
Entering edit mode
Thanks for all the fast input :) Best. D li On Tue, Mar 18, 2014 at 3:46 PM, Paul Geeleher <paulgeeleher@gmail.com>wrote: > Check out in this paper: > http://bib.oxfordjournals.org/content/12/6/634.long > > > Paul. > > On Tue, Mar 18, 2014 at 3:21 PM, Dli [guest] <guest@bioconductor.org> > wrote: > > > > Dear Community, > > > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have > been tried to search existed packages for process this kind of data. There > is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using > BioConductor" descried the package 'exonmap' seems no longer being > supported. Did anyone have some suggestions? Thanks in advance. > > > > Best. > > > > -- output of sessionInfo(): > > > > I am using R 3.0.1 in MacOSX. > > > > -- > > Sent via the guest posting facility at bioconductor.org. > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > -- > Dr. Paul Geeleher, PhD > Section of Hematology-Oncology > Department of Medicine > The University of Chicago > 900 E. 57th St., > KCBD, Room 7144 > Chicago, IL 60637 > -- > www.bioinformaticstutorials.com > [[alternative HTML version deleted]]
ADD REPLY
0
Entering edit mode
@james-w-macdonald-5106
Last seen 10 hours ago
United States
You can use either oligo or xps for these arrays. Best, Jim On Tuesday, March 18, 2014 4:21:55 PM, Dli [guest] wrote: > > Dear Community, > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. > > Best. > > -- output of sessionInfo(): > > I am using R 3.0.1 in MacOSX. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
ADD COMMENT

Login before adding your answer.

Traffic: 785 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6