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Question: recommend package for exon array analysis
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3.7 years ago by
Guest User12k
Guest User12k wrote:
Dear Community, I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. Best. -- output of sessionInfo(): I am using R 3.0.1 in MacOSX. -- Sent via the guest posting facility at bioconductor.org.
ADD COMMENTlink modified 3.7 years ago by Paul Geeleher1.3k • written 3.7 years ago by Guest User12k
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gravatar for Paul Geeleher
3.7 years ago by
Paul Geeleher1.3k
Paul Geeleher1.3k wrote:
Check out in this paper: http://bib.oxfordjournals.org/content/12/6/634.long Paul. On Tue, Mar 18, 2014 at 3:21 PM, Dli [guest] <guest at="" bioconductor.org=""> wrote: > > Dear Community, > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. > > Best. > > -- output of sessionInfo(): > > I am using R 3.0.1 in MacOSX. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Dr. Paul Geeleher, PhD Section of Hematology-Oncology Department of Medicine The University of Chicago 900 E. 57th St., KCBD, Room 7144 Chicago, IL 60637 -- www.bioinformaticstutorials.com
ADD COMMENTlink written 3.7 years ago by Paul Geeleher1.3k
Thanks for all the fast input :) Best. D li On Tue, Mar 18, 2014 at 3:46 PM, Paul Geeleher <paulgeeleher@gmail.com>wrote: > Check out in this paper: > http://bib.oxfordjournals.org/content/12/6/634.long > > > Paul. > > On Tue, Mar 18, 2014 at 3:21 PM, Dli [guest] <guest@bioconductor.org> > wrote: > > > > Dear Community, > > > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have > been tried to search existed packages for process this kind of data. There > is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using > BioConductor" descried the package 'exonmap' seems no longer being > supported. Did anyone have some suggestions? Thanks in advance. > > > > Best. > > > > -- output of sessionInfo(): > > > > I am using R 3.0.1 in MacOSX. > > > > -- > > Sent via the guest posting facility at bioconductor.org. > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > -- > Dr. Paul Geeleher, PhD > Section of Hematology-Oncology > Department of Medicine > The University of Chicago > 900 E. 57th St., > KCBD, Room 7144 > Chicago, IL 60637 > -- > www.bioinformaticstutorials.com > [[alternative HTML version deleted]]
ADD REPLYlink written 3.7 years ago by lidaof450
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gravatar for James W. MacDonald
3.7 years ago by
United States
James W. MacDonald45k wrote:
You can use either oligo or xps for these arrays. Best, Jim On Tuesday, March 18, 2014 4:21:55 PM, Dli [guest] wrote: > > Dear Community, > > I recently need to analysis batch of Mouse Exon ST 1.0 array, I have been tried to search existed packages for process this kind of data. There is a paper "Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor" descried the package 'exonmap' seems no longer being supported. Did anyone have some suggestions? Thanks in advance. > > Best. > > -- output of sessionInfo(): > > I am using R 3.0.1 in MacOSX. > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
ADD COMMENTlink written 3.7 years ago by James W. MacDonald45k
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