CellMix package use with own data matrix
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Riba Michela ▴ 90
Last seen 5 months ago
Hi, I'd like to start using CellMix package. I have my own data matrix from expression profiling using microarrays. Is it possible to use them instead of GEO datasets to make calculation? Is it sufficient to convert the matrix into an expressionSet object? And how could it be converted into an ExpressionMix object to fullfill all the requirements to be used with most of the algorithms proposed? By now I could only run csSAM starting from a data matrix and cell proportions thanks a lot, Michela Dr. Michela Riba Genome Function Unit Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute Via Olgettina 58 20132 Milano Italy lab: +39 02 2643 9114 skype: mic_mir32 riba.michela@gmail.com riba.michela@hsr.it Se avete ricevuto il presente messaggio per errore, Vi preghiamo di darne immediata comunicazione al mittente e di provvedere alla sua cancellazione dal vostro computer. Grazie If you have received this e-mail in error, please let the sender know and delete it from your computer. Thank you [[alternative HTML version deleted]]
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