Question: fasta biostrings bioconductor
4.0 years ago by
Guest User • 12k
Guest User • 12k wrote:
I posted this same quandary on Biostars and stack overflow. I am attempting to import a fasta file of sequences into R using Bioconductor's 'Biostrings' package and the 'DNAStringSet' function but I keep getting the same error: Error in .Call2("new_XString_from_CHARACTER", classname, x, start(solved_SEW), : key 112 (char 'p') not in lookup table My fasta file ("FileName.fa") is comprised of various length sequences, in the following format: >GeneNameOne CAGACACCCATAGATACAGATAGACAGATAGAGAAGACACCACCACACAATGA >GeneNameTwo CGCGACATGAACCCATGATAGACGATGAGACCCCACACACACC ...etc I performed 'grep p FileName.fa' in the Unix terminal, but I received no output. Does anyone have an idea on what is going on? Thanks in advance. -- output of sessionInfo(): Error in .Call2("new_XString_from_CHARACTER", classname, x, start(solved_SEW), : key 112 (char 'p') not in lookup table -- Sent via the guest posting facility at bioconductor.org.
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