Question: RamiGO package function getAmigoTree broken
0
gravatar for Asta Laiho
5.3 years ago by
Asta Laiho120
Finland
Asta Laiho120 wrote:
Hi, I have routinely used the RamiGO package (that I really like!) for plotting go graphs but now something seems to have gone broken for the getAmigoTree function: goIDs <- c("GO:0051130","GO:0019912","GO:0005783") color <- c("lightblue","red","yellow") pp <- getAmigoTree(goIDs=goIDs,color=color, + filename="example") Error during wrapup: unable to open <html><head> <title>301 Moved Permanently</title> </head><body>

Moved Permanently

The document has moved here.

</body></html> sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] C/UTF-8/C/C/C/C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] RamiGO_1.8.0 gsubfn_0.6-5 proto_0.3-10 loaded via a namespace (and not attached): [1] BiocGenerics_0.8.0 RCurl_1.95-4.1 RCytoscape_1.12.0 XML_3.95-0.2 [5] XMLRPC_0.3-0 graph_1.40.1 igraph_0.7.0 parallel_3.0.2 [9] png_0.1-7 stats4_3.0.2 tcltk_3.0.2 tools_3.0.2 I hope itÂ’s possible to fix the package! Best wishes, Asta Laiho [[alternative HTML version deleted]]
go ramigo • 514 views
ADD COMMENTlink modified 5.3 years ago by Dan Tenenbaum8.2k • written 5.3 years ago by Asta Laiho120
Answer: RamiGO package function getAmigoTree broken
0
gravatar for Dan Tenenbaum
5.3 years ago by
Dan Tenenbaum8.2k
United States
Dan Tenenbaum8.2k wrote:
Hello Asta, ----- Original Message ----- > From: "Asta Laiho" <asta.laiho at="" btk.fi=""> > To: bioconductor at r-project.org > Sent: Wednesday, April 2, 2014 1:37:14 AM > Subject: [BioC] RamiGO package function getAmigoTree broken > > Hi, > > I have routinely used the RamiGO package (that I really like!) for > plotting go graphs but now something seems to have gone broken for > the getAmigoTree function: > The release versionof Ramigo has been fixed. Version 1.8.1 will be available late tomorrow (Saturday) morning (Seattle time). You can install it with: source("http://bioconductor.org/biocLite.R") biocLite("RamiGO") Dan > goIDs <- c("GO:0051130","GO:0019912","GO:0005783") > color <- c("lightblue","red","yellow") > pp <- getAmigoTree(goIDs=goIDs,color=color, > + filename="example") > Error during wrapup: unable to open "-//IETF//DTD HTML 2.0//EN"> > <html><head> > 301 Moved Permanently > </head><body> >

Moved Permanently

>

The document has moved href="http://amigo.geneontology.org/visualize">here.

> </body></html> > > sessionInfo() > R version 3.0.2 (2013-09-25) > Platform: x86_64-apple-darwin10.8.0 (64-bit) > > locale: > [1] C/UTF-8/C/C/C/C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] RamiGO_1.8.0 gsubfn_0.6-5 proto_0.3-10 > > loaded via a namespace (and not attached): > [1] BiocGenerics_0.8.0 RCurl_1.95-4.1 RCytoscape_1.12.0 > XML_3.95-0.2 > [5] XMLRPC_0.3-0 graph_1.40.1 igraph_0.7.0 > parallel_3.0.2 > [9] png_0.1-7 stats4_3.0.2 tcltk_3.0.2 > tools_3.0.2 > > I hope it?s possible to fix the package! > > Best wishes, > Asta Laiho > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor
ADD COMMENTlink written 5.3 years ago by Dan Tenenbaum8.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 310 users visited in the last hour