Question: IdeogramTrack and bigWig file errors in Gviz
0
gravatar for Robert Ivanek
5.7 years ago by
Robert Ivanek660
Switzerland
Robert Ivanek660 wrote:
Hi MIles, I have just tested it on my mac and it worked. However I am using developmental version of R and Bioconductor packages. Best Robert library(Gviz) gtrack <- GenomeAxisTrack() b1_dex <- DataTrack("~/Downloads/nalm6_dex.bw", strand="+",genome ="hg19", name="Fkbp5") plotTracks(list(gtrack, b1_dex), from = 35540000, to = 35698000,type="histogram", chromosome="chr6?) My session info: R Under development (unstable) (2014-04-03 r65359) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] C attached base packages: [1] parallel grid stats graphics grDevices utils datasets methods base other attached packages: [1] Gviz_1.7.10 BiocGenerics_0.9.3 loaded via a namespace (and not attached): [1] AnnotationDbi_1.25.17 BBmisc_1.5 BSgenome_1.31.12 BatchJobs_1.2 [5] Biobase_2.23.6 BiocParallel_0.5.18 Biostrings_2.31.20 DBI_0.2-7 [9] Formula_1.1-1 GenomeInfoDb_0.99.26 GenomicAlignments_0.99.36 GenomicFeatures_1.15.14 [13] GenomicRanges_1.15.42 Hmisc_3.14-3 IRanges_1.21.39 R.methodsS3_1.6.1 [17] RColorBrewer_1.0-5 RCurl_1.95-4.1 RSQLite_0.11.4 Rcpp_0.11.1 [21] Rsamtools_1.15.38 VariantAnnotation_1.9.48 XML_3.98-1.1 XVector_0.3.7 [25] biomaRt_2.19.3 biovizBase_1.11.14 bitops_1.0-6 brew_1.0-6 [29] cluster_1.15.2 codetools_0.2-8 colorspace_1.2-4 dichromat_2.0-0 [33] digest_0.6.4 fail_1.2 foreach_1.4.1 iterators_1.0.6 [37] labeling_0.2 lattice_0.20-27 latticeExtra_0.6-26 matrixStats_0.8.14 [41] munsell_0.4.2 plyr_1.8.1 rtracklayer_1.23.20 scales_0.2.3 [45] sendmailR_1.1-2 splines_3.2.0 stats4_3.2.0 stringr_0.6.2 [49] survival_2.37-7 tools_3.2.0 zlibbioc_1.9.0 On 3 Apr 2014, at 21:59, Miles Pufall <miles.pufall at="" gmail.com=""> wrote: > Hi Guys - > > Just checking in to let you know I?m still not able to use bigwig files with Gviz on my mac. The same files still work fine in linux. Do you know if there?s a solution in the works? > > Thx - > > Miles > > R version 3.0.3 (2014-03-06) > Platform: x86_64-apple-darwin10.8.0 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] parallel grid stats graphics grDevices utils datasets methods base > > other attached packages: > [1] TxDb.Hsapiens.UCSC.hg19.knownGene_2.10.1 GenomicFeatures_1.14.5 AnnotationDbi_1.24.0 > [4] Biobase_2.22.0 GenomicRanges_1.14.4 XVector_0.2.0 > [7] IRanges_1.20.7 BiocGenerics_0.8.0 Gviz_1.6.0 > > loaded via a namespace (and not attached): > [1] biomaRt_2.18.0 Biostrings_2.30.1 biovizBase_1.10.8 bitops_1.0-6 BSgenome_1.30.0 cluster_1.15.1 colorspace_1.2-4 > [8] DBI_0.2-7 dichromat_2.0-0 Formula_1.1-1 Hmisc_3.14-3 labeling_0.2 lattice_0.20-27 latticeExtra_0.6-26 > [15] munsell_0.4.2 plyr_1.8.1 RColorBrewer_1.0-5 Rcpp_0.11.1 RCurl_1.95-4.1 Rsamtools_1.14.3 RSQLite_0.11.4 > [22] rtracklayer_1.22.7 scales_0.2.3 splines_3.0.3 stats4_3.0.3 stringr_0.6.2 survival_2.37-7 tools_3.0.3 > [29] XML_3.98-1.1 zlibbioc_1.8.0 > > On Apr 29, 2013, at 8:01 AM, Robert Ivanek <robert.ivanek at="" unibas.ch=""> wrote: > >> Dear Michael, >> >> Here is the link of the BigWigWile which does not work on MAC platform >> but works on linux. I tried to load it with rtracklayer directly but it >> always crashed on my MAC. >> >> https://dl.dropboxusercontent.com/u/11268633/Nalm6_ChIPseq/nalm6_de x.bw >> >> Best >> Robert >> >> ## --------------------------------------------------------------- >> ## MAC >> >> library(Gviz) >> gtrack <- GenomeAxisTrack() >> b1_dex <- DataTrack("~/nalm6_dex.bw", strand="+",genome ="hg19"); >> names(b1_dex)<-"Fkbp5"; >> plotTracks(list(gtrack, b1_dex), from = 35540000, to = 35698000, >> type="histogram", chromosome="chr6") >> >> Abort trap: 6 >> >> sessionInfo() >> >> ## R Under development (unstable) (2013-04-17 r62600) >> ## Platform: x86_64-apple-darwin12.3.0/x86_64 (64-bit) >> >> ## locale: >> ## [1] C/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 >> >> ## attached base packages: >> ## [1] grid stats graphics grDevices utils datasets >> methods base >> >> ## other attached packages: >> ## [1] Gviz_1.5.1 >> >> ## loaded via a namespace (and not attached): >> ## [1] AnnotationDbi_1.23.4 BSgenome_1.29.0 Biobase_2.21.0 >> BiocGenerics_0.7.2 Biostrings_2.29.1 >> ## [6] DBI_0.2-6 GenomicFeatures_1.13.1 >> GenomicRanges_1.13.7 Hmisc_3.10-1 IRanges_1.19.3 >> ## [11] RColorBrewer_1.0-5 RCurl_1.95-4.1 RSQLite_0.11.3 >> Rsamtools_1.13.5 XML_3.96-1.1 >> ## [16] biomaRt_2.17.0 biovizBase_1.9.1 bitops_1.0-5 >> cluster_1.14.4 colorspace_1.2-2 >> ## [21] compiler_3.1.0 dichromat_2.0-0 labeling_0.1 >> lattice_0.20-15 munsell_0.4 >> ## [26] parallel_3.1.0 plyr_1.8 rtracklayer_1.21.3 >> scales_0.2.3 stats4_3.1.0 >> ## [31] stringr_0.6.2 tools_3.1.0 zlibbioc_1.7.0 >> >> library(rtracklayer) >> sessionInfo() >> ## R Under development (unstable) (2013-04-17 r62600) >> ## Platform: x86_64-apple-darwin12.3.0/x86_64 (64-bit) >> >> ## locale: >> ## [1] C/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 >> >> ## attached base packages: >> ## [1] parallel stats graphics grDevices utils datasets >> methods base >> >> ## other attached packages: >> ## [1] rtracklayer_1.21.3 GenomicRanges_1.13.7 IRanges_1.19.3 >> BiocGenerics_0.7.2 >> >> ## loaded via a namespace (and not attached): >> ## [1] BSgenome_1.29.0 Biostrings_2.29.1 RCurl_1.95-4.1 >> Rsamtools_1.13.5 XML_3.96-1.1 bitops_1.0-5 >> ## [7] stats4_3.1.0 tools_3.1.0 zlibbioc_1.7.0 >> >> import.bw("nalm6_dex.bw", GRanges("chr6", IRanges(start=35540000, >> end=35698000), strand="+")) >> >> Abort trap: 6 >> >> >> >> ## --------------------------------------------------------------- >> >> ## --------------------------------------------------------------- >> ## LINUX >> >> ## R version 3.0.0 Patched (2013-04-08 r62518) >> ## Platform: x86_64-unknown-linux-gnu (64-bit) >> >> ## locale: >> ## [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C >> LC_TIME=en_GB.UTF-8 >> ## [4] LC_COLLATE=C LC_MONETARY=en_US.utf8 >> LC_MESSAGES=en_US.utf8 >> ## [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C >> ## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 >> LC_IDENTIFICATION=C >> >> ## attached base packages: >> ## [1] grid stats graphics grDevices utils datasets >> methods base >> >> ## other attached packages: >> ## [1] Gviz_1.4.1 >> >> ## loaded via a namespace (and not attached): >> ## [1] AnnotationDbi_1.22.3 BSgenome_1.28.0 Biobase_2.20.0 >> BiocGenerics_0.6.0 >> ## [5] Biostrings_2.28.0 DBI_0.2-6 >> GenomicFeatures_1.12.1 GenomicRanges_1.13.0 >> ## [9] Hmisc_3.10-1 IRanges_1.18.0 RColorBrewer_1.0-5 >> RCurl_1.95-4.1 >> ## [13] RSQLite_0.11.3 Rsamtools_1.12.2 XML_3.96-1.1 >> biomaRt_2.16.0 >> ## [17] biovizBase_1.8.0 bitops_1.0-5 cluster_1.14.4 >> colorspace_1.2-2 >> ## [21] compiler_3.0.0 dichromat_2.0-0 labeling_0.1 >> lattice_0.20-15 >> ## [25] munsell_0.4 parallel_3.0.0 plyr_1.8 >> rtracklayer_1.20.1 >> ## [29] scales_0.2.3 stats4_3.0.0 stringr_0.6.2 >> tools_3.0.0 >> ## [33] zlibbioc_1.6.0 >> >> >> >> ## R Under development (unstable) (2013-04-08 r62518) >> ## Platform: x86_64-unknown-linux-gnu (64-bit) >> >> ## locale: >> ## [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C >> LC_TIME=en_GB.UTF-8 >> ## [4] LC_COLLATE=C LC_MONETARY=en_US.utf8 >> LC_MESSAGES=en_US.utf8 >> ## [7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C >> ## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_GB.UTF-8 >> LC_IDENTIFICATION=C >> >> ## attached base packages: >> ## [1] grid stats graphics grDevices utils datasets >> methods base >> >> ## other attached packages: >> ## [1] Gviz_1.5.1 >> >> ## loaded via a namespace (and not attached): >> ## [1] AnnotationDbi_1.23.4 BSgenome_1.29.0 Biobase_2.21.0 >> BiocGenerics_0.7.2 >> ## [5] Biostrings_2.29.1 DBI_0.2-6 >> GenomicFeatures_1.13.1 GenomicRanges_1.13.7 >> ## [9] Hmisc_3.10-1 IRanges_1.19.3 RColorBrewer_1.0-5 >> RCurl_1.95-4.1 >> ## [13] RSQLite_0.11.3 Rsamtools_1.13.5 XML_3.96-1.1 >> biomaRt_2.17.0 >> ## [17] biovizBase_1.9.1 bitops_1.0-5 cluster_1.14.4 >> colorspace_1.2-2 >> ## [21] dichromat_2.0-0 labeling_0.1 lattice_0.20-15 >> munsell_0.4 >> ## [25] parallel_3.1.0 plyr_1.8 rtracklayer_1.21.3 >> scales_0.2.3 >> ## [29] stats4_3.1.0 stringr_0.6.2 tools_3.1.0 >> zlibbioc_1.7.0 >> >> >> On 26/04/13 21:31, Miles Pufall wrote:> Sure - I'm not sure of the >> protocol, so I'm sending this large file by replying to you directly. >> Just to re-emphasize, I was able to work with this file on my Linux box, >> but not on my mac (rMBP, 16Gb memory). You can grab it from my dropbox >> here: >>> >>> >>> Let me know if you need anything else. >>> >>> Miles >>> >>> Miles Pufall, PhD >>> Assistant Professor, Department of Biochemistry >>> University of Iowa >>> 51 Newton Rd., BSB 4-430 >>> Iowa City, IA 52242 >>> Office: 319-384-1820 >>> Email: miles-pufall at uiowa.edu >>> >>> >>> On Apr 26, 2013, at 8:00 AM, Robert Ivanek <robert.ivanek at="" unibas.ch=""> >>> wrote: >>> >>>> Dear Dweebis, >>>> >>>> Thanks for reporting this issue. The first one is fixed, there was a bug >>>> in "chromosome<-" method . Fixed versions 1.4.1 (2.12 branch) and 1.5.1 >>>> (devel) should be available in 24 hours. >>>> >>>> Regarding the crash with BigWig file, would you mind to share it? >>>> >>>> Best >>>> Robert >>>> >>>> On 26 Apr 2013, at 06:49, "Dweebis [guest]" <guest at="" bioconductor.org=""> >> wrote: >>>> >>>>> >>>>> I'm trying to use Gviz to make figures displaying some ChIPseq data. >> I'd converted it to bigWig files to display in a genome browser and to >> store more easily. When I use Gviz on a Linux workstation, it seems to >> go smoothly, but when I use my MacBook Pro I have a few problems. The >> first is running some code from the vignette, which gives me the >> following error: >>>>>> library(Gviz) >>>>> Loading required package: grid >>>>>> ideoTrack <- IdeogramTrack(genome = "hg19", chromosome = "chrX") >>>>>> plotTracks(ideoTrack, from = 85000000, to = 129000000) >>>>> Error in .normargSeqnames(seqnames) : >>>>> supplied 'seqnames' cannot contain NAs or empty strings ("") >>>>> >>>>> The second is when I try to plot from my bigWig files: >>>>>> library("Gviz") >>>>> Loading required package: grid >>>>>> library(GenomicRanges) >>>>> Loading required package: BiocGenerics >>>>> Loading required package: parallel >>>>> >>>>> Attaching package: ??~BiocGenerics??T >>>>> >>>>> The following objects are masked from ??~package:parallel??T: >>>>> >>>>> clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, >>>>> clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, >> parSapply, >>>>> parSapplyLB >>>>> >>>>> The following object is masked from ??~package:stats??T: >>>>> >>>>> xtabs >>>>> >>>>> The following objects are masked from ??~package:base??T: >>>>> >>>>> anyDuplicated, as.data.frame, cbind, colnames, duplicated, eval, >> Filter, Find, >>>>> get, intersect, lapply, Map, mapply, match, mget, order, paste, >> pmax, pmax.int, >>>>> pmin, pmin.int, Position, rank, rbind, Reduce, rep.int, rownames, >> sapply, >>>>> setdiff, sort, table, tapply, union, unique, unlist >>>>> >>>>> Loading required package: IRanges >>>>>> setwd("~/Desktop/B1_ChIPseq") >>>>>> gtrack <- GenomeAxisTrack() >>>>>> b1_dex <- DataTrack("/Volumes/puf_3/Nalm6/nalm6_dex_n499.bw", >> strand="+",genome ="hg19"); >>>>>> names(b1_dex)<-"Fkbp5"; >>>>>> plotTracks(list(gtrack, b1_dex), from = 35540000, to = 35698000, >> type="histogram", chromosome="chr6") >>>>> >>>>> This crashes R completely with an exit message: Abort trap: 6 >>>>> >>>>> There is an associated OSX crash report, which I've pasted below. >>>>> >>>>> Any ideas what's going wrong? >>>>> >>>>> Thx - >>>>> >>>>> D >>>>> >>>>> Process: R [26469] >>>>> Path: /Library/Frameworks/R.framework/Resources/bin/exec/R >>>>> Identifier: R >>>>> Version: ??? >>>>> Code Type: X86-64 (Native) >>>>> Parent Process: bash [26264] >>>>> User ID: 501 >>>>> >>>>> Date/Time: 2013-04-25 23:24:05.617 -0500 >>>>> OS Version: Mac OS X 10.8.3 (12D78) >>>>> Report Version: 10 >>>>> >>>>> Interval Since Last Report: 2714 sec >>>>> Crashes Since Last Report: 7 >>>>> Per-App Crashes Since Last Report: 1 >>>>> Anonymous UUID: >> 0FFEC26B-8E19-7735-0F96-8B3430A59ECE >>>>> >>>>> Crashed Thread: 0 Dispatch queue: com.apple.main-thread >>>>> >>>>> Exception Type: EXC_CRASH (SIGABRT) >>>>> Exception Codes: 0x0000000000000000, 0x0000000000000000 >>>>> >>>>> Application Specific Information: >>>>> [26469] stack overflow >>>>> >>>>> Thread 0 Crashed:: Dispatch queue: com.apple.main-thread >>>>> 0 libsystem_kernel.dylib 0x00007fff8a832212 >> __pthread_kill + 10 >>>>> 1 libsystem_c.dylib 0x00007fff926f0b54 >> pthread_kill + 90 >>>>> 2 libsystem_c.dylib 0x00007fff92734e9e __abort + 159 >>>>> 3 libsystem_c.dylib 0x00007fff92735d17 >> __stack_chk_fail + 195 >>>>> 4 rtracklayer.so 0x0000000107427d24 bptFileFind >> + 212 >>>>> 5 rtracklayer.so 0x0000000107429104 >> bbiOverlappingBlocks + 68 >>>>> 6 rtracklayer.so 0x000000010742cb00 >> bigWigIntervalQuery + 128 >>>>> 7 rtracklayer.so 0x0000000107425bc0 >> BWGFile_query + 448 >>>>> 8 libR.dylib 0x0000000100071033 do_dotcall >> + 547 (dotcode.c:585) >>>>> 9 libR.dylib 0x0000000100099d67 Rf_eval + >> 1335 (eval.c:612) >>>>> 10 libR.dylib 0x00000001000a7771 do_set + >> 369 (eval.c:1863) >>>>> 11 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 12 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 13 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 14 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 15 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 16 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 17 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 18 libR.dylib 0x00000001000a86a2 >> R_execMethod + 1410 (eval.c:1076) >>>>> 19 methods.so 0x00000001005eb474 >> R_dispatchGeneric + 1972 >>>>> 20 libR.dylib 0x00000001000d6235 >> do_standardGeneric + 565 (objects.c:1142) >>>>> 21 libR.dylib 0x0000000100099da3 Rf_eval + >> 1395 (eval.c:616) >>>>> 22 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 23 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 24 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 25 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 26 libR.dylib 0x00000001000a86a2 >> R_execMethod + 1410 (eval.c:1076) >>>>> 27 methods.so 0x00000001005eb474 >> R_dispatchGeneric + 1972 >>>>> 28 libR.dylib 0x00000001000d6235 >> do_standardGeneric + 565 (objects.c:1142) >>>>> 29 libR.dylib 0x0000000100099da3 Rf_eval + >> 1395 (eval.c:616) >>>>> 30 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 31 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 32 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 33 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 34 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 35 libR.dylib 0x00000001000a7771 do_set + >> 369 (eval.c:1863) >>>>> 36 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 37 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 38 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 39 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 40 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 41 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 42 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 43 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 44 libR.dylib 0x00000001000a7771 do_set + >> 369 (eval.c:1863) >>>>> 45 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 46 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 47 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 48 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 49 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 50 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 51 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 52 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 53 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 54 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 55 libR.dylib 0x00000001000a86a2 >> R_execMethod + 1410 (eval.c:1076) >>>>> 56 methods.so 0x00000001005eb474 >> R_dispatchGeneric + 1972 >>>>> 57 libR.dylib 0x00000001000d6235 >> do_standardGeneric + 565 (objects.c:1142) >>>>> 58 libR.dylib 0x0000000100099da3 Rf_eval + >> 1395 (eval.c:616) >>>>> 59 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 60 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 61 libR.dylib 0x000000010000eb81 do_lapply + >> 673 (apply.c:76) >>>>> 62 libR.dylib 0x00000001000d3c5a do_internal >> + 362 (names.c:1168) >>>>> 63 libR.dylib 0x000000010009cd1f bcEval + >> 11791 (eval.c:4583) >>>>> 64 libR.dylib 0x000000010009994f Rf_eval + >> 287 (eval.c:515) >>>>> 65 libR.dylib 0x00000001000a86a2 >> R_execMethod + 1410 (eval.c:1076) >>>>> 66 methods.so 0x00000001005eb474 >> R_dispatchGeneric + 1972 >>>>> 67 libR.dylib 0x00000001000d6235 >> do_standardGeneric + 565 (objects.c:1142) >>>>> 68 libR.dylib 0x0000000100099da3 Rf_eval + >> 1395 (eval.c:616) >>>>> 69 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 70 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 71 libR.dylib 0x00000001000a7771 do_set + >> 369 (eval.c:1863) >>>>> 72 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 73 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 74 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 75 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 76 libR.dylib 0x00000001000a7ad0 do_begin + >> 384 (eval.c:1534) >>>>> 77 libR.dylib 0x0000000100099bd6 Rf_eval + >> 934 (eval.c:584) >>>>> 78 libR.dylib 0x00000001000a529e >> Rf_applyClosure + 1390 (eval.c:980) >>>>> 79 libR.dylib 0x0000000100099e05 Rf_eval + >> 1493 (eval.c:631) >>>>> 80 libR.dylib 0x00000001000c97df >> Rf_ReplIteration + 879 (main.c:258) >>>>> 81 libR.dylib 0x00000001000c9e63 >> run_Rmainloop + 211 (main.c:307) >>>>> 82 R 0x0000000100000e5b main + 27 >>>>> 83 R 0x0000000100000e34 start + 52 >>>>> >>>>> Thread 1:: Dispatch queue: com.apple.libdispatch-manager >>>>> 0 libsystem_kernel.dylib 0x00007fff8a832d16 kevent + 10 >>>>> 1 libdispatch.dylib 0x00007fff8affddea >> _dispatch_mgr_invoke + 883 >>>>> 2 libdispatch.dylib 0x00007fff8affd9ee >> _dispatch_mgr_thread + 54 >>>>> >>>>> Thread 2: >>>>> 0 libsystem_kernel.dylib 0x00007fff8a832322 __select + 10 >>>>> 1 grDevices.so 0x0000000102ea8440 -[ELThread >> eventsThread:] + 176 >>>>> 2 com.apple.Foundation 0x00007fff8f55ecd2 >> __NSThread__main__ + 1345 >>>>> 3 libsystem_c.dylib 0x00007fff926ef7a2 >> _pthread_start + 327 >>>>> 4 libsystem_c.dylib 0x00007fff926dc1e1 >> thread_start + 13 >>>>> >>>>> Thread 0 crashed with X86 Thread State (64-bit): >>>>> rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: >> 0x00007fff5fbf83f8 rdx: 0x0000000000000000 >>>>> rdi: 0x0000000000000f07 rsi: 0x0000000000000006 rbp: >> 0x00007fff5fbf8420 rsp: 0x00007fff5fbf83f8 >>>>> r8: 0x00007fff7abed278 r9: 0x0000000000000000 r10: >> 0x0000000020000000 r11: 0x0000000000000206 >>>>> r12: 0x00007fff5fbf84f0 r13: 0x0000000000000004 r14: >> 0x00007fff7abee180 r15: 0x0000000107293010 >>>>> rip: 0x00007fff8a832212 rfl: 0x0000000000000206 cr2: >> 0x00007fff7abe6ff0 >>>>> Logical CPU: 0 >>>>> >>>>> Binary Images: >>>>> 0x100000000 - 0x100000ff7 +R (???) >> <d62f3923-33a9-31e3-8256-72609aff38df> >> /Library/Frameworks/R.framework/Resources/bin/exec/R >>>>> 0x100003000 - 0x10026efff +libR.dylib (3) >> <2FA3EDB5-B755-3972-AFBA-337B24212428> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libR.dylib >>>>> 0x10038c000 - 0x1003b5ff7 +libRblas.dylib (0) >> <869671F9-C174-39EA-8496-9E88B343A3B0> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRblas .dylib >>>>> 0x1003ba000 - 0x100470fcf +libgfortran.2.dylib (3) >> <acf1816e-ea8a-4db9-a893-a4ef0cefffba> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfort ran.2.dylib >>>>> 0x1004b5000 - 0x1004dffd9 +libreadline.5.2.dylib (5.2) >> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadl ine.5.2.dylib >>>>> 0x1005c2000 - 0x1005c9fff +utils.so (0) >> <8FBF096E-B6CE-398E-A920-01DE1B245C41> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/util s/libs/utils.so >>>>> 0x1005e9000 - 0x1005eefff +methods.so (0) >> <ab37fbdb-4142-3274-affb-b2fb7fd32fc7> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/meth ods/libs/methods.so >>>>> 0x1005f7000 - 0x1005f9fef +bitops.so (0) >> <f9843053-e910-36cf-9df1-f4121020f969> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/bito ps/libs/bitops.so >>>>> 0x1007f2000 - 0x1007f5fef +parallel.so (0) >> <e5a82d0c-98bd-3e65-a7ee-1fab5c8b6264> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/para llel/libs/parallel.so >>>>> 0x1007f9000 - 0x1007fcfff +Biobase.so (0) >> <68F5403C-3382-31CD-BDAB-4335D037FE5E> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Biob ase/libs/Biobase.so >>>>> 0x101194000 - 0x1011cffef +graphics.so (0) >> <9E6394E4-AF37-3F25-A180-026E82583AF2> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grap hics/libs/graphics.so >>>>> 0x1011da000 - 0x1011e3fff +RCurl.so (0) >> <66E5F530-2EF3-32CB-9373-1A6491E8366A> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RCur l/libs/RCurl.so >>>>> 0x1011ed000 - 0x1011effff +lattice.so (0) >> <5A52F152-052E-3C10-B9B3-5B486A910DD7> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/latt ice/libs/lattice.so >>>>> 0x1011f2000 - 0x1011f3ff7 +plyr.so (0) >> <eb5cbaa5-f26d-31d4-a292-f9ac0b2a189e> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/plyr /libs/plyr.so >>>>> 0x10120f000 - 0x101219fff +GenomicRanges.so (0) >> <844F62EE-EEF9-3C56-812A-4E75A899CCB2> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Geno micRanges/libs/GenomicRanges.so >>>>> 0x101224000 - 0x101230fff +colorspace.so (0) >> <0E7C120B-148E-351A-92A1-C7963AC07174> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/colo rspace/libs/colorspace.so >>>>> 0x10126e000 - 0x10127aff7 +cluster.so (0) >> <55B40D4D-8432-3FEB-BBB7-8E65C948C17C> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/clus ter/libs/cluster.so >>>>> 0x10127e000 - 0x10127fff7 +biovizBase.so (0) >> <45F295A2-1E32-3E5C-96B9-1657114AE545> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/biov izBase/libs/biovizBase.so >>>>> 0x101396000 - 0x1013b1fff +grid.so (0) >> <0A0B45EC-AC1D-3F33-A57E-6B234CC42505> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grid /libs/grid.so >>>>> 0x1013be000 - 0x1013c3fff +Hmisc.so (0) >> <45B74820-59DF-3402-9F5C-CB4A0A3E90D4> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Hmis c/libs/Hmisc.so >>>>> 0x101420000 - 0x101436ff7 +XML.so (0) >> <e2b500ca-56d9-35b8-aba5-802c93b67bf3> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/XML/ libs/XML.so >>>>> 0x1029ae000 - 0x1029befff +tools.so (0) >> <cef0dc14-7405-36d1-8696-da60801dca44> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/tool s/libs/tools.so >>>>> 0x102e82000 - 0x102ebffff +grDevices.so (0) >> <f7087219-a4a6-33c3-a0a8-19aaded62431> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/grDe vices/libs/grDevices.so >>>>> 0x102edb000 - 0x102f65fef +stats.so (0) >> <99BD4BBA-AE70-38A3-BC7E-ABEF5775D09A> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/stat s/libs/stats.so >>>>> 0x103900000 - 0x103a7efff +libRlapack.dylib (3) >> <c2dd755e-0f94-37f9-85f2-305e6f3720fb> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libRlapa ck.dylib >>>>> 0x103e66000 - 0x103e97ff7 +IRanges.so (0) >> <65E44E38-96BC-3AC5-8490-5EDE934749F4> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/IRan ges/libs/IRanges.so >>>>> 0x103f9a000 - 0x103fd5fef +Rsamtools.so (0) >> <2ECCAE63-A2CE-3097-8AFF-31E11FB22989> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rsam tools/libs/Rsamtools.so >>>>> 0x107420000 - 0x107461ff7 +rtracklayer.so (0) >> <a1b33ecb-4c97-3d25-a0c1-21609054a3ca> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/rtra cklayer/libs/rtracklayer.so >>>>> 0x108000000 - 0x10802aff7 +Biostrings.so (0) >> <d2594ec2-693d-3b33-ade7-6cd903626301> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Bios trings/libs/Biostrings.so >>>>> 0x10f800000 - 0x10f8c8fff +RSQLite.so (0) >> <e5afc155-2126-35f7-bb65-9ec27183117a> >> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/RSQL ite/libs/RSQLite.so >>>>> 0x7fff619d3000 - 0x7fff61a0793f dyld (210.2.3) >> <a40597aa-5529-3337-8c09-d8a014eb1578> /usr/lib/dyld >>>>> 0x7fff8973b000 - 0x7fff8975aff7 libresolv.9.dylib (51) >> <0882DC2D-A892-31FF-AD8C-0BB518C48B23> /usr/lib/libresolv.9.dylib >>>>> 0x7fff8975b000 - 0x7fff897aaff7 libFontRegistry.dylib (100) >> <2E03D7DA-9B8F-31BB-8FB5-3D3B6272127F> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib >>>>> 0x7fff89b4c000 - 0x7fff89b59fff com.apple.AppleFSCompression >> (49 - 1.0) <5508344A-2A7E-3122-9562-6F363910A80E> >> /System/Library/PrivateFrameworks/AppleFSCompression.framework/Vers ions/A/AppleFSCompression >>>>> 0x7fff89b5a000 - 0x7fff89bb0fff com.apple.HIServices (1.20 - >> 417) <a1129272-fec8-350b-ba26-5a97f23c413d> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/HIServices.framework/Versions/A/HIServices >>>>> 0x7fff89e2f000 - 0x7fff89e5bff7 libRIP.A.dylib (331.0.4) >> <4B261CE2-524E-3FA9-9437-B70DAC1EAB95> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib >>>>> 0x7fff89ebc000 - 0x7fff89ec1fff libcompiler_rt.dylib (30) >> <08F8731D-5961-39F1-AD00-4590321D24A9> /usr/lib/system/libcompiler_rt.dylib >>>>> 0x7fff89efd000 - 0x7fff8a083fff libBLAS.dylib (1073.4) >> <c102c0f6-8cb6-3b49-ba6b-2eb61f0b2784> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vecLib.framework/Versions/A/libBLAS.dylib >>>>> 0x7fff8a09a000 - 0x7fff8a0f1ff7 com.apple.ScalableUserInterface >> (1.0 - 1) <f1d43dfb-1796-361b-ad4b-39f1eed3be19> >> /System/Library/Frameworks/QuartzCore.framework/Versions/A/Framewor ks/ScalableUserInterface.framework/Versions/A/ScalableUserInterface >>>>> 0x7fff8a373000 - 0x7fff8a3d0ff7 com.apple.audio.CoreAudio >> (4.1.1 - 4.1.1) <d15f3fb3-be53-3545-ad37-9a25a597fe3c> >> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio >>>>> 0x7fff8a3d1000 - 0x7fff8a43afff libstdc++.6.dylib (56) >> <eaa2b53e-eade-39cf-a0ef-fb9d4940672a> /usr/lib/libstdc++.6.dylib >>>>> 0x7fff8a43b000 - 0x7fff8a63bfff libicucore.A.dylib (491.11.2) >> <fd6282d8-df3f-3842-8c2e-cf478d2b9669> /usr/lib/libicucore.A.dylib >>>>> 0x7fff8a63c000 - 0x7fff8a755fff com.apple.ImageIO.framework >> (3.2.0 - 849) <c52aed41-a7c2-300b-91fa-5af73718d243> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO >>>>> 0x7fff8a789000 - 0x7fff8a798fff com.apple.opengl (1.8.7 - >> 1.8.7) <26F7FF79-6BB2-3968-B70D-71D4E07C9551> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL >>>>> 0x7fff8a799000 - 0x7fff8a7c3ff7 com.apple.CoreVideo (1.8 - >> 99.4) <e5082966-6d81-3973-a05a-38aa5b85f886> >> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo >>>>> 0x7fff8a820000 - 0x7fff8a83bff7 libsystem_kernel.dylib >> (2050.22.13) <5A961E2A-CFB8-362B-BC43-122704AEB047> >> /usr/lib/system/libsystem_kernel.dylib >>>>> 0x7fff8a977000 - 0x7fff8a981fff >> com.apple.speech.recognition.framework (4.1.5 - 4.1.5) >> <d803919c-3102-3515-a178-61e9c86c46a1> >> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/S peechRecognition.framework/Versions/A/SpeechRecognition >>>>> 0x7fff8a991000 - 0x7fff8a9e0ff7 libcorecrypto.dylib (106.2) >> <ce0c29a3-c420-339b-adaa-52f4683233cc> /usr/lib/system/libcorecrypto.dylib >>>>> 0x7fff8a9ed000 - 0x7fff8aa04fff libGL.dylib (8.7.25) >> <15F5CB64-847B-3D3D-9663-E0523F15F513> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bGL.dylib >>>>> 0x7fff8aa16000 - 0x7fff8aa18fff com.apple.TrustEvaluationAgent >> (2.0 - 23) <a97d348b-32bf-3e52-8df2-59bfad21e1a3> >> /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Ve rsions/A/TrustEvaluationAgent >>>>> 0x7fff8aa1d000 - 0x7fff8aa2bfff com.apple.Librarian (1.1 - 1) >> <5AC28666-7642-395F-A923-C6F8A274BBBD> >> /System/Library/PrivateFrameworks/Librarian.framework/Versions/A/Li brarian >>>>> 0x7fff8aa2c000 - 0x7fff8aa2dff7 libSystem.B.dylib (169.3) >> <365477AB-D641-389D-B8F4-A1FAE9657EEE> /usr/lib/libSystem.B.dylib >>>>> 0x7fff8aa2e000 - 0x7fff8aa50ff7 libxpc.dylib (140.42) >> <bbe558bd-5e55-35e4-89ed-1aa6b056d05a> /usr/lib/system/libxpc.dylib >>>>> 0x7fff8aa51000 - 0x7fff8ab02fff com.apple.LaunchServices (539.7 >> - 539.7) <da7c602e-5e01-31b8-925d-b45360ca089f> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/LaunchServices.framework/Versions/A/LaunchServices >>>>> 0x7fff8ab03000 - 0x7fff8ab0afff com.apple.NetFS (5.0 - 4.0) >> <82E24B9A-7742-3DA3-9E99-ED267D98C05E> >> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS >>>>> 0x7fff8ab22000 - 0x7fff8ab34ff7 libz.1.dylib (43) >> <2A1551E8-A272-3DE5-B692-955974FE1416> /usr/lib/libz.1.dylib >>>>> 0x7fff8ab35000 - 0x7fff8ab3bfff libmacho.dylib (829) >> <bf332ad9-e89f-387e-92a4-6e1ab74bd4d9> /usr/lib/system/libmacho.dylib >>>>> 0x7fff8ab3c000 - 0x7fff8ab3cfff libOpenScriptingUtil.dylib >> (148.3) <f8681222-0969-3b10-8bce-c55a4b9c520c> >> /usr/lib/libOpenScriptingUtil.dylib >>>>> 0x7fff8ade0000 - 0x7fff8ae11ff7 com.apple.DictionaryServices >> (1.2 - 184.4) <054F2D6F-9CFF-3EF1-9778-25C551B616C1> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/DictionaryServices.framework/Versions/A/DictionaryServices >>>>> 0x7fff8ae12000 - 0x7fff8af0ffff libsqlite3.dylib (138.1) >> <ade9cb98-d77d-300c-a32a-556b7440769f> /usr/lib/libsqlite3.dylib >>>>> 0x7fff8af10000 - 0x7fff8afcdff7 com.apple.ColorSync (4.8.0 - >> 4.8.0) <6CE333AE-EDDB-3768-9598-9DB38041DC55> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/ColorSync.framework/Versions/A/ColorSync >>>>> 0x7fff8aff7000 - 0x7fff8aff8fff libsystem_blocks.dylib (59) >> <d92dcbc3-541c-37bd-aade-acc75a0c59c8> >> /usr/lib/system/libsystem_blocks.dylib >>>>> 0x7fff8aff9000 - 0x7fff8b00eff7 libdispatch.dylib (228.23) >> <d26996bf-fc57-39eb-8829-f63585561e09> /usr/lib/system/libdispatch.dylib >>>>> 0x7fff8b00f000 - 0x7fff8b016fff libGFXShared.dylib (8.7.25) >> <869580B2-39CB-30C3-B76E-73BB4894B6B7> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bGFXShared.dylib >>>>> 0x7fff8b0d9000 - 0x7fff8b22afff >> com.apple.audio.toolbox.AudioToolbox (1.8 - 1.8) >> <c680ee1a-b4ed-3e77-a08c-dc47922aca33> >> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioT oolbox >>>>> 0x7fff8b729000 - 0x7fff8b748ff7 com.apple.ChunkingLibrary (2.0 >> - 133.3) <8BEC9AFB-DCAA-37E8-A5AB-24422B234ECF> >> /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Version s/A/ChunkingLibrary >>>>> 0x7fff8b749000 - 0x7fff8b749fff com.apple.CoreServices (57 - >> 57) <9DD44CB0-C644-35C3-8F57-0B41B3EC147D> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreSe rvices >>>>> 0x7fff8b7da000 - 0x7fff8b7dcfff libquarantine.dylib (52) >> <4BE2E642-A14F-340A-B482-5BD2AEFD9C24> /usr/lib/system/libquarantine.dylib >>>>> 0x7fff8c093000 - 0x7fff8c19efff libFontParser.dylib (84.6) >> <96C42E49-79A6-3475-B5E4-6A782599A6DA> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib >>>>> 0x7fff8c1e3000 - 0x7fff8c1e7ff7 com.apple.TCC (1.0 - 1) >> <f2f3b753-fc73-3543-8bbe-859fdbb4d6a6> >> /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC >>>>> 0x7fff8c230000 - 0x7fff8c239ff7 com.apple.CommerceCore (1.0 - >> 26.1) <40A129A8-4E5D-3C7A-B299-8CB203C4C65D> >> /System/Library/PrivateFrameworks/CommerceKit.framework/Versions/A/ Frameworks/CommerceCore.framework/Versions/A/CommerceCore >>>>> 0x7fff8c23a000 - 0x7fff8c631fff libLAPACK.dylib (1073.4) >> <d632ec8b-2ba0-3853-800a-20da00a1091c> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vecLib.framework/Versions/A/libLAPACK.dylib >>>>> 0x7fff8c652000 - 0x7fff8c661ff7 libxar.1.dylib (105) >> <370ED355-E516-311E-BAFD-D80633A84BE1> /usr/lib/libxar.1.dylib >>>>> 0x7fff8c67c000 - 0x7fff8c690fff >> com.apple.speech.synthesis.framework (4.1.12 - 4.1.12) >> <94EDF2AB-809C-3D15-BED5-7AD45B2A7C16> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis >>>>> 0x7fff8c698000 - 0x7fff8c6a5ff7 com.apple.NetAuth (4.0 - 4.0) >> <f5bc7d7d-af28-3c83-a674-dada48ff7810> >> /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth >>>>> 0x7fff8c798000 - 0x7fff8c85dff7 com.apple.coreui (2.0 - 181.1) >> <83D2C92D-6842-3C9D-9289-39D5B4554C3A> >> /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI >>>>> 0x7fff8c85e000 - 0x7fff8c899fff com.apple.LDAPFramework (2.4.28 >> - 194.5) <67FBDB29-3B9F-309A-BA7C-AA5921D9A4FB> >> /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP >>>>> 0x7fff8c89a000 - 0x7fff8ccb7fff FaceCoreLight (2.4.1) >> <a34c9575-c4c1-31b1-809b-7751070b4e8b> >> /System/Library/PrivateFrameworks/FaceCoreLight.framework/Versions/ A/FaceCoreLight >>>>> 0x7fff8ccc1000 - 0x7fff8ccc4fff libRadiance.dylib (849) >> <f7d9a0fd-1195-34cb-bfe5-79daf3f40ac3> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibRadiance.dylib >>>>> 0x7fff8cde0000 - 0x7fff8ce3afff >> com.apple.print.framework.PrintCore (8.3 - 387.2) >> <5BA0CBED-4D80-386A-9646-F835C9805B71> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/PrintCore.framework/Versions/A/PrintCore >>>>> 0x7fff8ce3b000 - 0x7fff8ce60ff7 libc++abi.dylib (26) >> <d86169f3-9f31-377a-9af3-db17142052e4> /usr/lib/libc++abi.dylib >>>>> 0x7fff8ce61000 - 0x7fff8ce9bff7 com.apple.GSS (3.0 - 2.0) >> <970CAE00-1437-3F4E-B677-0FDB3714C08C> >> /System/Library/Frameworks/GSS.framework/Versions/A/GSS >>>>> 0x7fff8cea3000 - 0x7fff8d1d3fff com.apple.HIToolbox (2.0 - >> 626.1) <656D08C2-9068-3532-ABDD-32EC5057CCB2> >> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/H IToolbox.framework/Versions/A/HIToolbox >>>>> 0x7fff8d1d4000 - 0x7fff8d478ff7 com.apple.CoreImage (8.2.4 - >> 1.0.1) <4A6B017F-B9F7-36DA-943D-A95611F147EA> >> /System/Library/Frameworks/QuartzCore.framework/Versions/A/Framewor ks/CoreImage.framework/Versions/A/CoreImage >>>>> 0x7fff8d4fd000 - 0x7fff8d4fdfff libkeymgr.dylib (25) >> <cc9e3394-be16-397f-926b-e579b60ee429> /usr/lib/system/libkeymgr.dylib >>>>> 0x7fff8d4fe000 - 0x7fff8d503fff com.apple.OpenDirectory (10.8 - >> 151.10) <cf44120b-9b01-32dd-852e-c9c0e1243fc0> >> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenD irectory >>>>> 0x7fff8d504000 - 0x7fff8d606fff libcrypto.0.9.8.dylib (47) >> <74F165AD-4572-3B26-B0E2-A97477FE59D0> /usr/lib/libcrypto.0.9.8.dylib >>>>> 0x7fff8ddb0000 - 0x7fff8ddb2ff7 libunc.dylib (25) >> <92805328-CD36-34FF-9436-571AB0485072> /usr/lib/system/libunc.dylib >>>>> 0x7fff8ddb3000 - 0x7fff8df9dff7 com.apple.CoreFoundation (6.8 - >> 744.18) <a60c3c9b-3764-3291-844c-c487acf77c2c> >> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/Core Foundation >>>>> 0x7fff8dfde000 - 0x7fff8e014fff com.apple.DebugSymbols (98 - >> 98) <14E788B1-4EB2-3FD7-934B-849534DFC198> >> /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A /DebugSymbols >>>>> 0x7fff8e0ca000 - 0x7fff8e0d8fff libcommonCrypto.dylib (60027) >> <baafe0c9-bb86-3ca7-88c0-e3cba98da06f> /usr/lib/system/libcommonCrypto.dylib >>>>> 0x7fff8e0d9000 - 0x7fff8e11cff7 com.apple.RemoteViewServices >> (2.0 - 80.6) <5CFA361D-4853-3ACC-9EFC-A2AC1F43BA4B> >> /System/Library/PrivateFrameworks/RemoteViewServices.framework/Vers ions/A/RemoteViewServices >>>>> 0x7fff8e11d000 - 0x7fff8e11efff liblangid.dylib (116) >> <864C409D-D56B-383E-9B44-A435A47F2346> /usr/lib/liblangid.dylib >>>>> 0x7fff8e480000 - 0x7fff8e4b7ff7 libssl.0.9.8.dylib (47) >> <923945E6-C489-3406-903B-A362410753F8> /usr/lib/libssl.0.9.8.dylib >>>>> 0x7fff8e4b8000 - 0x7fff8e526fff com.apple.framework.IOKit >> (2.0.1 - 755.22.5) <1547DA6F-9793-30A2-8E92-7368DE84D46C> >> /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit >>>>> 0x7fff8e5e0000 - 0x7fff8e662ff7 com.apple.Heimdal (3.0 - 2.0) >> <c94b0c6c-1320-35a1-8143-fe252e7b2a08> >> /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal >>>>> 0x7fff8e663000 - 0x7fff8e6cbff7 libc++.1.dylib (65.1) >> <20E31B90-19B9-3C2A-A9EB-474E08F9FE05> /usr/lib/libc++.1.dylib >>>>> 0x7fff8e6cc000 - 0x7fff8e72bfff com.apple.AE (645.6 - 645.6) >> <44F403C1-660A-3543-AB9C-3902E02F936F> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/AE.framework/Versions/A/AE >>>>> 0x7fff8eae4000 - 0x7fff8eae8fff libGIF.dylib (849) >> <6A664B4D-0A88-33F7-9064-0CD159AB9CE9> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibGIF.dylib >>>>> 0x7fff8eae9000 - 0x7fff8eaf1ff7 libsystem_dnssd.dylib (379.37) >> <616FC901-151E-38BF-B2C4-24A351C5FAAD> /usr/lib/system/libsystem_dnssd.dylib >>>>> 0x7fff8ed83000 - 0x7fff8edaafff >> com.apple.framework.familycontrols (4.1 - 410) >> <50F5A52C-8FB6-300A-977D-5CFDE4D5796B> >> /System/Library/PrivateFrameworks/FamilyControls.framework/Versions /A/FamilyControls >>>>> 0x7fff8edab000 - 0x7fff8eeadfff libJP2.dylib (849) >> <4EEA33EB-AF9F-365D-A572-F7D11AD1C76F> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibJP2.dylib >>>>> 0x7fff8eeae000 - 0x7fff8efcefff com.apple.desktopservices >> (1.7.3 - 1.7.3) <707F77D2-EC0E-3431-840F-B984BD7ABDD6> >> /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Ver sions/A/DesktopServicesPriv >>>>> 0x7fff8f1b8000 - 0x7fff8f1b9fff >> libDiagnosticMessagesClient.dylib (8) >> <8548E0DC-0D2F-30B6-B045-FE8A038E76D8> >> /usr/lib/libDiagnosticMessagesClient.dylib >>>>> 0x7fff8f1ba000 - 0x7fff8f1d0fff >> com.apple.MultitouchSupport.framework (235.29 - 235.29) >> <617EC8F1-BCE7-3553-86DD-F857866E1257> >> /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versi ons/A/MultitouchSupport >>>>> 0x7fff8f343000 - 0x7fff8f371ff7 libsystem_m.dylib (3022.6) >> <b434be5c-25ab-3ebd-baa7-5304b34e3441> /usr/lib/system/libsystem_m.dylib >>>>> 0x7fff8f3a1000 - 0x7fff8f3d7fff libsystem_info.dylib (406.17) >> <4FFCA242-7F04-365F-87A6-D4EFB89503C1> /usr/lib/system/libsystem_info.dylib >>>>> 0x7fff8f4c9000 - 0x7fff8f826ff7 com.apple.Foundation (6.8 - >> 945.16) <89BD68FD-72C8-35C1-94C6-3A07F097C50D> >> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation >>>>> 0x7fff8f827000 - 0x7fff8f833fff libCSync.A.dylib (331.0.4) >> <c7043bb7-284d-3b9f-a5cb-78ade691b2d4> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dyl ib >>>>> 0x7fff8f882000 - 0x7fff8f91dfff com.apple.CoreSymbolication >> (3.0 - 117) <c304fdb8-2ff7-34bc-858a-2b96c2b039d5> >> /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versi ons/A/CoreSymbolication >>>>> 0x7fff8f91e000 - 0x7fff8f93fff7 libCRFSuite.dylib (33) >> <736ABE58-8DED-3289-A042-C25AF7AE5B23> /usr/lib/libCRFSuite.dylib >>>>> 0x7fff8f940000 - 0x7fff8f97fff7 com.apple.QD (3.42 - 285) >> <8DF36FCA-C06B-30F4-A631-7BE2FF7E56D1> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/QD.framework/Versions/A/QD >>>>> 0x7fff8f9ad000 - 0x7fff8fa07ff7 com.apple.opencl (2.2.18 - >> 2.2.18) <4A78E53C-17B0-3B2D-A9EA-EF8720FE4134> >> /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL >>>>> 0x7fff8fa08000 - 0x7fff8fa09ff7 libdnsinfo.dylib (453.19) >> <14202FFB-C3CA-3FCC-94B0-14611BF8692D> /usr/lib/system/libdnsinfo.dylib >>>>> 0x7fff8fa56000 - 0x7fff8fa67ff7 libsasl2.2.dylib (166) >> <649CAE0E-8FFE-3C60-A849-BE6300E4B726> /usr/lib/libsasl2.2.dylib >>>>> 0x7fff8fa68000 - 0x7fff8fac4ff7 com.apple.Symbolication (1.3 - >> 93) <f2c7e0b6-b241-3020-b30a-0636d0fa3378> >> /System/Library/PrivateFrameworks/Symbolication.framework/Versions/ A/Symbolication >>>>> 0x7fff8fc32000 - 0x7fff8fcd8ff7 >> com.apple.CoreServices.OSServices (557.6 - 557.6) >> <1BDB5456-0CE9-301C-99C1-8EFD0D2BFCCD> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/OSServices.framework/Versions/A/OSServices >>>>> 0x7fff8fe8b000 - 0x7fff8feb2ff7 com.apple.PerformanceAnalysis >> (1.16 - 16) <e4888388-f41b-313e-9cbb-5807d077bda9> >> /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Ver sions/A/PerformanceAnalysis >>>>> 0x7fff8ff0d000 - 0x7fff8ff2efff com.apple.Ubiquity (1.2 - >> 243.15) <c9a7ee77-b637-3676-b667-c0843bbb0409> >> /System/Library/PrivateFrameworks/Ubiquity.framework/Versions/A/Ubi quity >>>>> 0x7fff901f3000 - 0x7fff901f3fff com.apple.Accelerate (1.8 - >> Accelerate 1.8) <6AD48543-0864-3D40-80CE-01F184F24B45> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate >>>>> 0x7fff901f4000 - 0x7fff9021cfff libJPEG.dylib (849) >> <5C9052F6-D0B3-39CC-8302-468B43D694D5> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibJPEG.dylib >>>>> 0x7fff90631000 - 0x7fff90632ff7 libremovefile.dylib (23.2) >> <6763BC8E-18B8-3AD9-8FFA-B43713A7264F> /usr/lib/system/libremovefile.dylib >>>>> 0x7fff90633000 - 0x7fff90633fff com.apple.Accelerate.vecLib >> (3.8 - vecLib 3.8) <b5a18ee8-df81-38dd-acaf-7076b2a26225> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vecLib.framework/Versions/A/vecLib >>>>> 0x7fff90634000 - 0x7fff9064bfff com.apple.CFOpenDirectory (10.8 >> - 151.10) <ffbba538-00b5-334e-ba5b-c8ad6cdcda14> >> /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frame works/CFOpenDirectory.framework/Versions/A/CFOpenDirectory >>>>> 0x7fff9068e000 - 0x7fff90696fff liblaunch.dylib (442.26.2) >> <2F71CAF8-6524-329E-AC56-C506658B4C0C> /usr/lib/system/liblaunch.dylib >>>>> 0x7fff90697000 - 0x7fff906aaff7 com.apple.LangAnalysis (1.7.0 - >> 1.7.0) <2F2694E9-A7BC-33C7-B4CF-8EC907DF0FEB> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis >>>>> 0x7fff906ab000 - 0x7fff9103b6ff com.apple.CoreGraphics (1.600.0 >> - 331.0.4) <4953961C-96DC-39D7-ADF5-B767F2A7E4E1> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics >>>>> 0x7fff910ad000 - 0x7fff910c0ff7 libbsm.0.dylib (32) >> <f497d3ce-40d9-3551-84b4-3d5e39600737> /usr/lib/libbsm.0.dylib >>>>> 0x7fff910f5000 - 0x7fff91d22ff7 com.apple.AppKit (6.8 - >> 1187.37) <faea8b77-210f-3c0f-b9cf-85a7595cca26> >> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit >>>>> 0x7fff91ffb000 - 0x7fff920f0fff libiconv.2.dylib (34) >> <fee8b996-eb44-37fa-b96e-d379664defe1> /usr/lib/libiconv.2.dylib >>>>> 0x7fff920f1000 - 0x7fff920fcfff libsystem_notify.dylib (98.5) >> <c49275cc-835a-3207-afba-8c01374927b6> >> /usr/lib/system/libsystem_notify.dylib >>>>> 0x7fff920fd000 - 0x7fff92109fff com.apple.CrashReporterSupport >> (10.8.3 - 417) <48EDDDF3-5720-39D6-B51F-D9AFB93327B3> >> /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Ve rsions/A/CrashReporterSupport >>>>> 0x7fff92184000 - 0x7fff921a6ff7 com.apple.Kerberos (2.0 - 1) >> <c49b8820-34ed-39d7-a407-a3e854153556> >> /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos >>>>> 0x7fff921a7000 - 0x7fff921d5fff com.apple.CoreServicesInternal >> (154.2 - 154.2) <3E6196E6-F3B4-316F-9E1F-13B6B9694C7E> >> /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Ve rsions/A/CoreServicesInternal >>>>> 0x7fff921d6000 - 0x7fff922a8ff7 com.apple.CoreText (260.0 - >> 275.16) <5BFC1D67-6A6F-38BC-9D90-9C712684EDAC> >> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText >>>>> 0x7fff922a9000 - 0x7fff922b4fff com.apple.CommonAuth (3.0 - >> 2.0) <7A953C1F-8B18-3E46-9BEA-26D9B5B7745D> >> /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/C ommonAuth >>>>> 0x7fff922b5000 - 0x7fff922b5fff com.apple.ApplicationServices >> (45 - 45) <a3abf20b-ed3a-32b5-830e-b37831a45a80> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /ApplicationServices >>>>> 0x7fff922b6000 - 0x7fff92323ff7 com.apple.datadetectorscore >> (4.1 - 269.2) <4FD4A7CE-BB00-3AAB-B7AA-AE395D5400EC> >> /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versi ons/A/DataDetectorsCore >>>>> 0x7fff92328000 - 0x7fff9237dff7 libTIFF.dylib (849) >> <c4d0e196-9319-319b-af72-8b63fb5af71b> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibTIFF.dylib >>>>> 0x7fff92522000 - 0x7fff925afff7 com.apple.SearchKit (1.4.0 - >> 1.4.0) <c7f43889-f8bf-3cb9-ad66-11aefcbcede7> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/SearchKit.framework/Versions/A/SearchKit >>>>> 0x7fff925b0000 - 0x7fff925b1ff7 libsystem_sandbox.dylib (220.2) >> <6838A6FD-8626-3356-BB4F-BB4787216207> >> /usr/lib/system/libsystem_sandbox.dylib >>>>> 0x7fff925b2000 - 0x7fff925bdff7 com.apple.bsd.ServiceManagement >> (2.0 - 2.0) <c12962d5-85fb-349e-aa56-64f4f487f219> >> /System/Library/Frameworks/ServiceManagement.framework/Versions/A/S erviceManagement >>>>> 0x7fff92611000 - 0x7fff92649fff libncurses.5.4.dylib (37.3) >> <68D5B5F5-8252-3F1E-AFF1-C6AFE145DBC1> /usr/lib/libncurses.5.4.dylib >>>>> 0x7fff926db000 - 0x7fff927a7ff7 libsystem_c.dylib (825.26) >> <4C9EB006-FE1F-3F8F-8074-DFD94CF2CE7B> /usr/lib/system/libsystem_c.dylib >>>>> 0x7fff927a8000 - 0x7fff92943fef com.apple.vImage (6.0 - 6.0) >> <fae13169-295a-33a5-8e6b-7c2cc1407fa7> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vImage.framework/Versions/A/vImage >>>>> 0x7fff92c33000 - 0x7fff92c77fff libcups.2.dylib (327.3) >> <71E771A1-0489-3417-8A4A-56A2C930F80C> /usr/lib/libcups.2.dylib >>>>> 0x7fff92c78000 - 0x7fff92d12fff libvMisc.dylib (380.6) >> <714336EA-1C0E-3735-B31C-19DFDAAF6221> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vecLib.framework/Versions/A/libvMisc.dylib >>>>> 0x7fff92d13000 - 0x7fff92d64ff7 com.apple.SystemConfiguration >> (1.12.2 - 1.12.2) <a4341bbd-a330-3a57-8891-e9c1a286a72d> >> /System/Library/Frameworks/SystemConfiguration.framework/Versions/A /SystemConfiguration >>>>> 0x7fff92dba000 - 0x7fff92ddafff libPng.dylib (849) >> <f4c23a55-f17b-3e4f-9e80-bc97f778ba49> >> /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/l ibPng.dylib >>>>> 0x7fff92e08000 - 0x7fff92e89fff com.apple.Metadata (10.7.0 - >> 707.5) <4140B1F6-7D73-33C7-B3F2-4DB349C31AE9> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/Metadata.framework/Versions/A/Metadata >>>>> 0x7fff93132000 - 0x7fff93134fff libCVMSPluginSupport.dylib >> (8.7.25) <a45e21e3-4b40-39b0-a8b6-411526a84f47> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bCVMSPluginSupport.dylib >>>>> 0x7fff93135000 - 0x7fff93181ff7 libauto.dylib (185.1) >> <73CDC482-16E3-3FC7-9BB4-FBA2DA44DBC2> /usr/lib/libauto.dylib >>>>> 0x7fff93184000 - 0x7fff93189fff libcache.dylib (57) >> <65187C6E-3FBF-3EB8-A1AA-389445E2984D> /usr/lib/system/libcache.dylib >>>>> 0x7fff931e5000 - 0x7fff931ebff7 libunwind.dylib (35.1) >> <21703D36-2DAB-3D8B-8442-EAAB23C060D3> /usr/lib/system/libunwind.dylib >>>>> 0x7fff931ec000 - 0x7fff932e9ff7 libxml2.2.dylib (22.3) >> <47B09CB2-C636-3024-8B55-6040F7829B4C> /usr/lib/libxml2.2.dylib >>>>> 0x7fff932ea000 - 0x7fff9332dff7 com.apple.bom (12.0 - 192) >> <0BF1F2D2-3648-36B7-BE4B-551A0173209B> >> /System/Library/PrivateFrameworks/Bom.framework/Versions/A/Bom >>>>> 0x7fff93385000 - 0x7fff9349d92f libobjc.A.dylib (532.2) >> <90D31928-F48D-3E37-874F-220A51FD9E37> /usr/lib/libobjc.A.dylib >>>>> 0x7fff934e7000 - 0x7fff934eaff7 libdyld.dylib (210.2.3) >> <f59367c9-c110-382b-a695-9035a6dd387e> /usr/lib/system/libdyld.dylib >>>>> 0x7fff934eb000 - 0x7fff934ebffd com.apple.audio.units.AudioUnit >> (1.8 - 1.8) <173346B7-614C-380B-8E80-9BD1BE501674> >> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit >>>>> 0x7fff934f8000 - 0x7fff93535fef libGLImage.dylib (8.7.25) >> <139A9892-A6F2-3F49-87FB-E7AC3F56E003> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bGLImage.dylib >>>>> 0x7fff93536000 - 0x7fff9354dfff com.apple.GenerationalStorage >> (1.1 - 132.3) <fd4a84b3-13a8-3c60-a59e-25a361447a17> >> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Ver sions/A/GenerationalStorage >>>>> 0x7fff935ee000 - 0x7fff935fcff7 libkxld.dylib (2050.22.13) >> <4AAF0573-8632-3D06-BE32-C5675F77638D> /usr/lib/system/libkxld.dylib >>>>> 0x7fff935fd000 - 0x7fff93628fff libxslt.1.dylib (11.3) >> <441776B8-9130-3893-956F-39C85FFA644F> /usr/lib/libxslt.1.dylib >>>>> 0x7fff93629000 - 0x7fff93630fff libcopyfile.dylib (89) >> <876573D0-E907-3566-A108-577EAD1B6182> /usr/lib/system/libcopyfile.dylib >>>>> 0x7fff93e5e000 - 0x7fff93ea6fff libcurl.4.dylib (69.2) >> <ebdbf42d-e4a6-3d05-a76b-2817d79d59e2> /usr/lib/libcurl.4.dylib >>>>> 0x7fff93ea7000 - 0x7fff93f0ffff libvDSP.dylib (380.6) >> <cd4c5eeb-9e63-30c4-8103-7a5eaea0be60> >> /System/Library/Frameworks/Accelerate.framework/Versions/A/Framewor ks/vecLib.framework/Versions/A/libvDSP.dylib >>>>> 0x7fff94062000 - 0x7fff94297ff7 com.apple.CoreData (106.1 - >> 407.7) <24E0A6B4-9ECA-3D12-B26A-72B9DCF09768> >> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData >>>>> 0x7fff9429b000 - 0x7fff94319ff7 com.apple.securityfoundation >> (6.0 - 55115.4) <c5461971-e455-31a6-99b8-af80c4bc26dd> >> /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/ SecurityFoundation >>>>> 0x7fff9431b000 - 0x7fff943b9ff7 com.apple.ink.framework (10.8.2 >> - 150) <84B9825C-3822-375F-BE58-A753444FBDE2> >> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/I nk.framework/Versions/A/Ink >>>>> 0x7fff95378000 - 0x7fff9568fff7 >> com.apple.CoreServices.CarbonCore (1037.5 - 1037.5) >> <731D8F92-1C52-3613-BA01-EFEA54DADF41> >> /System/Library/Frameworks/CoreServices.framework/Versions/A/Framew orks/CarbonCore.framework/Versions/A/CarbonCore >>>>> 0x7fff95690000 - 0x7fff95710ff7 >> com.apple.ApplicationServices.ATS (332 - 341.1) >> <bd83b039-ab25-3e3e-9975-a67dae66988b> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/ATS.framework/Versions/A/ATS >>>>> 0x7fff95711000 - 0x7fff95715fff libCGXType.A.dylib (331.0.4) >> <251D4D2D-92B9-3D56-B348-CD67397F71FE> >> /System/Library/Frameworks/ApplicationServices.framework/Versions/A /Frameworks/CoreGraphics.framework/Versions/A/Resources/libCGXType.A.d ylib >>>>> 0x7fff9595f000 - 0x7fff95c30ff7 com.apple.security (7.0 - >> 55179.11) <73958084-5BBC-3597-A751-7370B0C247E5> >> /System/Library/Frameworks/Security.framework/Versions/A/Security >>>>> 0x7fff95c4d000 - 0x7fff95c51fff libpam.2.dylib (20) >> <c8f45864-5b58-3237-87e1-2c258a1d73b8> /usr/lib/libpam.2.dylib >>>>> 0x7fff95ccf000 - 0x7fff95e44fff com.apple.CFNetwork (596.3.3 - >> 596.3.3) <3739DC8D-8610-3740-80EC-43E130779CB8> >> /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork >>>>> 0x7fff95e45000 - 0x7fff95e52fff libbz2.1.0.dylib (29) >> <ce9785e8-b535-3504-b392-82f0064d9af2> /usr/lib/libbz2.1.0.dylib >>>>> 0x7fff95e53000 - 0x7fff95e59fff com.apple.DiskArbitration >> (2.5.2 - 2.5.2) <c713a35a-360e-36ce-ac0a-25c86a3f50ca> >> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/Dis kArbitration >>>>> 0x7fff95e5a000 - 0x7fff95e5afff com.apple.vecLib (3.8 - vecLib >> 3.8) <794317C7-4E38-338A-A874-5E18001C8503> >> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib >>>>> 0x7fff95fbd000 - 0x7fff95fc1fff com.apple.IOSurface (86.0.4 - >> 86.0.4) <26F01CD4-B76B-37A3-989D-66E8140542B3> >> /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface >>>>> 0x7fff963ff000 - 0x7fff965adfff com.apple.QuartzCore (1.8 - >> 304.2) <234EABE1-067C-3DAE-BEAC-674526E232C2> >> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore >>>>> 0x7fff965ae000 - 0x7fff965bcff7 libsystem_network.dylib (77.10) >> <0D99F24E-56FE-380F-B81B-4A4C630EE587> >> /usr/lib/system/libsystem_network.dylib >>>>> 0x7fff96622000 - 0x7fff96626fff libCoreVMClient.dylib (32.3) >> <ad8391d9-56dd-3a78-a294-6a30e6ece1a2> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bCoreVMClient.dylib >>>>> 0x7fff96627000 - 0x7fff96701fff com.apple.backup.framework >> (1.4.2 - 1.4.2) <0B557393-CD2A-3076-BED2-F28D02E1EC1D> >> /System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup >>>>> 0x7fff96702000 - 0x7fff9674cff7 libGLU.dylib (8.7.25) >> <c243c6d3-3384-3db1-bb15-e27b65c87294> >> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/li bGLU.dylib >>>>> >>>>> External Modification Summary: >>>>> Calls made by other processes targeting this process: >>>>> task_for_pid: 2 >>>>> thread_create: 0 >>>>> thread_set_state: 0 >>>>> Calls made by this process: >>>>> task_for_pid: 0 >>>>> thread_create: 0 >>>>> thread_set_state: 0 >>>>> Calls made by all processes on this machine: >>>>> task_for_pid: 18259 >>>>> thread_create: 2 >>>>> thread_set_state: 0 >>>>> >>>>> VM Region Summary: >>>>> ReadOnly portion of Libraries: Total=154.5M resident=91.3M(59%) >> swapped_out_or_unallocated=63.1M(41%) >>>>> Writable regions: Total=445.0M written=272.1M(61%) >> resident=289.8M(65%) swapped_out=1276K(0%) unallocated=155.2M(35%) >>>>> >>>>> REGION TYPE VIRTUAL >>>>> =========== ======= >>>>> ATS (font support) 32.3M >>>>> ATS (font support) (reserved) 4K reserved VM address >> space (unallocated) >>>>> CG backing stores 10.3M >>>>> CG image 4K >>>>> CG raster data 96K >>>>> CG shared images 192K >>>>> CoreServices 7332K >>>>> MALLOC 336.8M >>>>> MALLOC guard page 48K >>>>> MALLOC_LARGE (reserved) 228K reserved VM address >> space (unallocated) >>>>> Memory tag=242 12K >>>>> STACK GUARD 56.0M >>>>> Stack 9232K >>>>> VM_ALLOCATE 16.1M >>>>> __DATA 50.6M >>>>> __IMAGE 528K >>>>> __LINKEDIT 53.8M >>>>> __TEXT 100.6M >>>>> __UNICODE 544K >>>>> mapped file 59.9M >>>>> shared memory 308K >>>>> =========== ======= >>>>> TOTAL 734.5M >>>>> TOTAL, minus reserved VM space 734.3M >>>>> >>>>> Model: MacBookPro10,1, BootROM MBP101.00EE.B02, 4 processors, Intel >> Core i7, 2.6 GHz, 16 GB, SMC 2.3f35 >>>>> Graphics: Intel HD Graphics 4000, Intel HD Graphics 4000, Built- In, >> 512 MB >>>>> Graphics: NVIDIA GeForce GT 650M, NVIDIA GeForce GT 650M, PCIe, 1024 MB >>>>> Memory Module: BANK 0/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE, >> 0x4D34373142314737334248302D434B302020 >>>>> Memory Module: BANK 1/DIMM0, 8 GB, DDR3, 1600 MHz, 0x80CE, >> 0x4D34373142314737334248302D434B302020 >>>>> AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, >> 0xEF), Broadcom BCM43xx 1.0 (5.106.98.100.16) >>>>> Bluetooth: Version 4.1.3f3 11349, 2 service, 18 devices, 1 incoming >> serial ports >>>>> Network Service: Wi-Fi, AirPort, en0 >>>>> Serial ATA Device: APPLE SSD SM512E, 500.28 GB >>>>> USB Device: FreeAgent GoFlex, 0x0bc2 (Seagate LLC), 0x5031, >> 0x14a00000 / 4 >>>>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, >> 0x1a100000 / 2 >>>>> USB Device: FaceTime HD Camera (Built-in), apple_vendor_id, 0x8510, >> 0x1a110000 / 3 >>>>> USB Device: hub_device, 0x8087 (Intel Corporation), 0x0024, >> 0x1d100000 / 2 >>>>> USB Device: hub_device, 0x0424 (SMSC), 0x2512, 0x1d180000 / 3 >>>>> USB Device: BRCM20702 Hub, 0x0a5c (Broadcom Corp.), 0x4500, >> 0x1d181000 / 5 >>>>> USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x8286, >> 0x1d181300 / 6 >>>>> USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, >> 0x0262, 0x1d182000 / 4 >>>>> USB Device: hub_device, 0x0424 (SMSC), 0x2514, 0x14100000 / 1 >>>>> USB Device: ScanSnap S1500, 0x04c5 (Fujitsu Ltd.), 0x11a2, >> 0x14140000 / 3 >>>>> USB Device: Microsoft Digital Sound System 80, 0x045e (Microsoft >> Corporation), 0x0014, 0x14120000 / 2 >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> -- output of sessionInfo(): >>>>> >>>>>> sessionInfo() >>>>> R version 3.0.0 (2013-04-03) >>>>> Platform: x86_64-apple-darwin10.8.0 (64-bit) >>>>> >>>>> locale: >>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 >>>>> >>>>> attached base packages: >>>>> [1] parallel grid stats graphics grDevices utils >> datasets methods base >>>>> >>>>> other attached packages: >>>>> [1] GenomicRanges_1.12.2 IRanges_1.18.0 BiocGenerics_0.6.0 >> Gviz_1.4.0 >>>>> >>>>> loaded via a namespace (and not attached): >>>>> [1] AnnotationDbi_1.22.2 Biobase_2.20.0 biomaRt_2.16.0 >> Biostrings_2.28.0 >>>>> [5] biovizBase_1.8.0 bitops_1.0-5 BSgenome_1.28.0 >> cluster_1.14.4 >>>>> [9] colorspace_1.2-2 DBI_0.2-6 dichromat_2.0-0 >> GenomicFeatures_1.12.0 >>>>> [13] Hmisc_3.10-1 labeling_0.1 lattice_0.20-15 >> munsell_0.4 >>>>> [17] plyr_1.8 RColorBrewer_1.0-5 RCurl_1.95-4.1 >> Rsamtools_1.12.2 >>>>> [21] RSQLite_0.11.3 rtracklayer_1.20.1 scales_0.2.3 >> stats4_3.0.0 >>>>> [25] stringr_0.6.2 tools_3.0.0 XML_3.95-0.2 >> zlibbioc_1.6.0 >>>>> >>>>> -- >>>>> Sent via the guest posting facility at bioconductor.org. >>>>> >>>>> _______________________________________________ >>>>> Bioconductor mailing list >>>>> Bioconductor at r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >
go network rtracklayer camera gviz • 1.2k views
ADD COMMENTlink written 5.7 years ago by Robert Ivanek660
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 181 users visited in the last hour