Phyloseq/DEseq transformed data
0
0
Entering edit mode
Susan Holmes ▴ 120
@susan-holmes-158
Last seen 8.1 years ago
Hi Michael and Sophie, Distances on transformed data still make sense, although Bray Curtis makes much less sense on the transformed counts than several others which are available in phyloseq as you suggest, one can get a pretty good idea of how to proceed by working through the supplementary material of the paper, it has it's own repos at: Also Sophie there is a github thread for phyloseq with deseq at: http://joey711.github.io/waste-not-supplemental/ and https://github.com/joey711 Best Susan
DESeq phyloseq DESeq phyloseq • 968 views
ADD COMMENT

Login before adding your answer.

Traffic: 243 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6