Problem installing latest Bioconductor version
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@guest-user-4897
Last seen 9.6 years ago
Hi, I installed the latest version of R and tried to install the compatible Bioconductor version but get the following error message: source("http://bioconductor.org/biocLite.R") Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help > biocLite() Error: 'no packages in repository (no internet connection?)' while trying http://bioconductor.org/packages/2.14/bioc Does anyone have a solution for this? - Leena -- output of sessionInfo(): sessionInfo() R version 3.1.0 (2014-04-10) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1] C/UTF-8/C/C/C/C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Sent via the guest posting facility at bioconductor.org.
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@itoshi-nikaido-6498
Last seen 9.6 years ago
Hi, Could you re-install R-3.1.0-snowleopard.pkg even if you use OS X 10.9 (Mavericks)? http://cran.r-project.org/bin/macosx/ cf. https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html Itoshi Best --- Itoshi NIKAIDO, Ph.D. <itoshi.nikaido at="" riken.jp=""> Bioinformatics Research Unit, Unit Leader RIKEN Advanced Center for Computing and Communication 304 Information Science Building, Hirosawa 2-1, Wako, Saitama, 351-0198 http://BiT.accc.riken.jp/ On Tue, Apr 15, 2014 at 10:09 PM, Leena Kyt?m?ki [guest] <guest at="" bioconductor.org=""> wrote: > > Hi, > > I installed the latest version of R and tried to install the compatible Bioconductor version but get the following error message: > > source("http://bioconductor.org/biocLite.R") > Bioconductor version 2.14 (BiocInstaller 1.14.1), ?biocLite for help >> biocLite() > Error: 'no packages in repository (no internet connection?)' while trying > http://bioconductor.org/packages/2.14/bioc > > Does anyone have a solution for this? > > - Leena > > -- output of sessionInfo(): > > sessionInfo() > R version 3.1.0 (2014-04-10) > Platform: x86_64-apple-darwin13.1.0 (64-bit) > > locale: > [1] C/UTF-8/C/C/C/C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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