----- Original Message -----
> From: "Peng [guest]" <guest at="" bioconductor.org="">
> To: bioconductor at r-project.org, "peng zhou" <peng.zhou at="" csiro.au="">
> Sent: Sunday, April 20, 2014 9:30:56 PM
> Subject: [BioC] problem with \"readCufflinks\"
> I have used cummeRbund a bit recently with Cuffdiff outputs from
> on Galaxy. It has worked ok but the last few days it does not. I
> have tried to install the package again but no success. Please see
> below for my problems, the function "readCufflilnks" does not work,
> know why? Many thanks!
> R 3.0.1
> -- output of sessionInfo():
By the way, sessionInfo() is an R command that gives information about
your version of R, operating system, and installed packages. Including
the output of this function can help us figure out problems and answer
> > cuff_data<-readCufflinks('D:\\AAA-Peng
> > Zhou\\R-3.0.1\\library\\AAAAAA')
> Error: could not find function "readCufflinks"
This might be simply that you haven't loaded the cummeRbund package,
so try this first:
If that does not give an error, then try your readCuffLinks command
> > biocLite("readCufflinks")
biocLite() is the command for installing packages. So if cummeRbund is
not installed, you can try this:
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.12 (BiocInstaller 1.10.4), R version
> Installing package(s) 'readCufflinks'
> Warning message:
> package ???readCufflinks??? is not available (for R version 3.0.1)
That's because readCufflinks is a function, not a package.
So all of this should work:
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