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prabhakar ghorpade
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@prabhakar-ghorpade-6464
Last seen 10.3 years ago
Hello,
I have following sequences for which I want to BLAST and see
result only for sequences showing > 95% Query coverage and >90%
identity?
Sequences
>1
CTTTGTCTTCCCCTATGTCATCCTCAATCTCTATGAAAGCAACAC
>2
CTATGTCATCCTCAATCTCTATGAAAGCAACACCGCTACCATAGA
Can you please Suggest how can I select them in R in NCBI BLAST so
that I get sequences showing > 95% Query coverage and >90% identity.
Is there program in R to select them? I want to detect number of
organism showing uniques results for given sequences.
Thanks.
Dr. Ghorpade Prabhakar B.
PhD Scholar ( Veterinary Biochemistry),
IVRI,
Izatnagar,
Bareilly, U.P.,
India
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Hi Malcolm,
Would you mind please give me a reference where I could learn the NCBI query in R? I'm really interested to learn but unfortunately couldn't find the good reference yet.
Thanks a lot and looking forward.
Maah