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Question: Gene expression and multivariables
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gravatar for chris Jhon
3.6 years ago by
chris Jhon260
chris Jhon260 wrote:
Hi, I have genome wide gene expression time series data for 4 time points,i have also multi variables for each of time point related to cell cluture conditions so have tables as follows time1 time2 time3 time4 Var1 Var2 Var3 Var4 and gene expression table cell line1 gene1 ...geneN cellline2 gene1 geneN I would like to relate gene expression with multi variables,Any idea? Thank you [[alternative HTML version deleted]]
ADD COMMENTlink modified 3.6 years ago by Paul Geeleher1.3k • written 3.6 years ago by chris Jhon260
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gravatar for Paul Geeleher
3.6 years ago by
Paul Geeleher1.3k
Paul Geeleher1.3k wrote:
I could be missing something here but I don't think its super clear what you mean by "relate gene expression with multi variables". It might be helpful to elaborate a little. Paul. On Sun, May 25, 2014 at 9:46 AM, chris Jhon <cjhon217 at="" gmail.com=""> wrote: > Hi, > > > I have genome wide gene expression time series data for 4 time points,i > have also multi variables for each of time point related to cell cluture > conditions so have tables as follows > > time1 time2 time3 time4 > Var1 > Var2 > Var3 > Var4 > > and gene expression table > > cell line1 gene1 ...geneN > cellline2 gene1 geneN > > I would like to relate gene expression with multi variables,Any idea? > > Thank you > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Dr. Paul Geeleher, PhD Section of Hematology-Oncology Department of Medicine The University of Chicago 900 E. 57th St., KCBD, Room 7144 Chicago, IL 60637 -- www.bioinformaticstutorials.com
ADD COMMENTlink written 3.6 years ago by Paul Geeleher1.3k
Hi paul, I mean by relate is how to correlate change in gene expression ,let say log fold change between time1 and time2 with multivariales of each cell culture experiment(enzyme,stimulator concentration,...etc), I tried correlation test but I got unclear results. Thank you On Mon, May 26, 2014 at 12:25 AM, Paul Geeleher <paulgeeleher@gmail.com>wrote: > I could be missing something here but I don't think its super clear > what you mean by "relate gene expression with multi variables". It > might be helpful to elaborate a little. > > > Paul. > > On Sun, May 25, 2014 at 9:46 AM, chris Jhon <cjhon217@gmail.com> wrote: > > Hi, > > > > > > I have genome wide gene expression time series data for 4 time points,i > > have also multi variables for each of time point related to cell > cluture > > conditions so have tables as follows > > > > time1 time2 time3 time4 > > Var1 > > Var2 > > Var3 > > Var4 > > > > and gene expression table > > > > cell line1 gene1 ...geneN > > cellline2 gene1 geneN > > > > I would like to relate gene expression with multi variables,Any idea? > > > > Thank you > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@r-project.org > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > -- > Dr. Paul Geeleher, PhD > Section of Hematology-Oncology > Department of Medicine > The University of Chicago > 900 E. 57th St., > KCBD, Room 7144 > Chicago, IL 60637 > -- > www.bioinformaticstutorials.com > [[alternative HTML version deleted]]
ADD REPLYlink written 3.5 years ago by chris Jhon260
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