edgeR case-study, SAGE profiles of tumor tissue - where to find data sets?
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@lisette-de-pillis-6586
Last seen 9.6 years ago
Dear edgeR people, I've just installed edgeR 3.6.2 following the instructions from http://www.bioconductor.org/packages/release/bioc/html/edgeR.html and downloaded the documentation from that same page. I would like to follow the example in chapter 4 of the document edgeRUsersGuide.pdf "SAGE pro les of normal and tumour tissue", but a web search for the files GSM728.txt, GSM729.txt, GSM755.txt, GSM756.txt yields no results. These files do not seem to have come bundled with the edgeR package. Could you please point me to where I can find these files? I am running R 3.0.2 (2013-09-25) on Mac OSX. Thank you! L.G. de Pillis, Ph.D. Norman F. Sprague Jr., Professor of Life Sciences and Professor of Mathematics Department of Mathematics Harvey Mudd College Claremont, CA 91711 909-621-8975 www.math.hmc.edu/~depillis [[alternative HTML version deleted]]
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