Goseq datasets
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@eduardo-andres-leon-6673
Last seen 7.1 years ago
Dear R helpers, I've been successfully using Goseq to measure GO and KEGG enrichment in diverse RNASeq experiment. I was wondering if is there any way to use different datasets : * Positional enrichment, for instance cytoband enrichment .... * Custom datasets ( In GSEA I used to create my own dataset to search for enrichment in customised networks ... for example special TF ... and others) Many thanks in advance ================================================ Computational Biology and Bioinformatics Institute of Biomedicine of Seville. Campus University Hospital "Virgen del Rocio". Avda. Manuel Siurot, s/n 41013 Seville. Phone: 955923129 ================================================ [[alternative HTML version deleted]]
RNASeq GO goseq RNASeq GO goseq • 690 views
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@andreseduardo-6677
Last seen 7.1 years ago
Dear R helpers, I've been successfully using Goseq to measure GO and KEGG enrichment in diverse RNASeq experiment. I was wondering if is there any way to use different datasets : * Positional enrichment, for instance cytoband enrichment .... * Custom datasets ( In GSEA I used to create my own dataset to search for enrichment in customised networks ... for example special TF ... and others) Many thanks in advance ================================================ Computational Biology and Bioinformatics Institute of Biomedicine of Seville. Campus University Hospital "Virgen del Rocio". Avda. Manuel Siurot, s/n 41013 Seville. Phone: 955923129 ================================================ **NOTA DE CONFIDENCIALIDAD** Este correo electr?nico, y ...{{dropped:3}}
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@eduardo-andres-leon-6673
Last seen 7.1 years ago
Dear R helpers, I've been successfully using Goseq to measure GO and KEGG enrichment in diverse RNASeq experiment. I was wondering if is there any way to use different datasets : * Positional enrichment, for instance cytoband enrichment .... * Custom datasets ( In GSEA I used to create my own dataset to search for enrichment in customised networks ... for example special TF ... and others) Many thanks in advance ================================================ Computational Biology and Bioinformatics Institute of Biomedicine of Seville. Campus University Hospital "Virgen del Rocio". Avda. Manuel Siurot, s/n 41013 Seville. Phone: 955923129 ================================================ [[alternative HTML version deleted]]
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@eduardo-andres-leon-6673
Last seen 7.1 years ago
Thanks, But I'm not talking about using GSEA. I mean to use other datasets (GOseq comes just with GO and KEGG) into GOSeq Sorry if I didn't explain myself On 30 Jul 2014, at 05:10, Yang,Jie <jyang32@mdanderson.org> wrote: > Hi, > > You can create the dataset by yourself and do the analysis. But the format of the dataset should be one of the required. Just create the dataset, load it and choose it in "run gsea". > > ________________________________________ > From: bioconductor-bounces@r-project.org [bioconductor- bounces@r-project.org] on behalf of Eduardo Andres Leon [eleon- ibis@us.es] > Sent: Tuesday, July 29, 2014 10:29 AM > To: list list > Subject: [BioC] Goseq datasets > > Dear R helpers, > I've been successfully using Goseq to measure GO and KEGG enrichment in diverse RNASeq experiment. I was wondering if is there any way to use different datasets : > * Positional enrichment, for instance cytoband enrichment .... > * Custom datasets ( In GSEA I used to create my own dataset to search for enrichment in customised networks ... for example special TF ... and others) > > Many thanks in advance > > ================================================ > > Computational Biology and Bioinformatics > Institute of Biomedicine of Seville. > Campus University Hospital "Virgen del Rocio". > Avda. Manuel Siurot, s/n > 41013 Seville. > Phone: 955923129 > > ================================================ > > > > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ================================================ Computational Biology and Bioinformatics Institute of Biomedicine of Seville. Campus University Hospital "Virgen del Rocio". Avda. Manuel Siurot, s/n 41013 Seville. Phone: 955923129 ================================================ [[alternative HTML version deleted]]
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