Question: ggvis: interactive heatmaps
0
gravatar for Abhishek Pratap
5.2 years ago by
United States
Abhishek Pratap170 wrote:
Just wondering if someone knows or have come up with an implementation of interactive heatmap using ggvis. Any other tools/pointers welcome too. Cheers! -Abhi
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ADD COMMENTlink modified 5.2 years ago by Ying Chen110 • written 5.2 years ago by Abhishek Pratap170
Answer: ggvis: interactive heatmaps
0
gravatar for Steve Lianoglou
5.2 years ago by
Denali
Steve Lianoglou12k wrote:
Hi, On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: > Just wondering if someone knows or have come up with an implementation > of interactive heatmap using ggvis. Any other tools/pointers welcome I wasn't there myself, but I think the RStudio/shiny folks presented something like this at the bioc conference last year ... namely: http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf HTH, -steve -- Steve Lianoglou Computational Biologist Genentech
ADD COMMENTlink written 5.2 years ago by Steve Lianoglou12k
Hi Steve I should have mentioned that I am using shiny interface to give user some options to do data filtering. I am interested in finding if there are tools that can help me get tootip and brushing capability. What I mean by brushing is to select subset of the data from the heatmap directly and tooltip to give the user point level info on the heatmap. Cheers! -Abhi On Mon, Aug 18, 2014 at 3:55 PM, Steve Lianoglou <lianoglou.steve at="" gene.com=""> wrote: > Hi, > > On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: >> Just wondering if someone knows or have come up with an implementation >> of interactive heatmap using ggvis. Any other tools/pointers welcome > > I wasn't there myself, but I think the RStudio/shiny folks presented > something like this at the bioc conference last year ... namely: > > http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf > > HTH, > -steve > > -- > Steve Lianoglou > Computational Biologist > Genentech
ADD REPLYlink written 5.2 years ago by Abhishek Pratap170
Hi Abhi, Have you tried Epivizr? I haven't done much with that package, but it might be more useful for what you are trying to do. Best, Jim On Mon, Aug 18, 2014 at 7:17 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: > Hi Steve > > I should have mentioned that I am using shiny interface to give user > some options to do data filtering. I am interested in finding if there > are tools that can help me get tootip and brushing capability. What I > mean by brushing is to select subset of the data from the heatmap > directly and tooltip to give the user point level info on the heatmap. > > Cheers! > -Abhi > > On Mon, Aug 18, 2014 at 3:55 PM, Steve Lianoglou > <lianoglou.steve at="" gene.com=""> wrote: > > Hi, > > > > On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> > wrote: > >> Just wondering if someone knows or have come up with an implementation > >> of interactive heatmap using ggvis. Any other tools/pointers welcome > > > > I wasn't there myself, but I think the RStudio/shiny folks presented > > something like this at the bioc conference last year ... namely: > > > > > http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf > > > > HTH, > > -steve > > > > -- > > Steve Lianoglou > > Computational Biologist > > Genentech > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]]
ADD REPLYlink written 5.2 years ago by James W. MacDonald51k
Answer: ggvis: interactive heatmaps
0
gravatar for Ying Chen
5.2 years ago by
Ying Chen110
Ying Chen110 wrote:
You'd better ask Winston Chang at ggvis google group (https://groups.google.com/forum/?hl=en#!forum/ggvis) directly, although he is kind dormant for the last couple of days :). Ying -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Abhishek Pratap Sent: Monday, August 18, 2014 6:50 PM To: bioconductor at r-project.org Subject: [BioC] ggvis: interactive heatmaps Just wondering if someone knows or have come up with an implementation of interactive heatmap using ggvis. Any other tools/pointers welcome too. Cheers! -Abhi _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor Confidentiality Note:\ This e-mail, and any attachment t...{{dropped:11}}
ADD COMMENTlink written 5.2 years ago by Ying Chen110
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