ggvis: interactive heatmaps
2
0
Entering edit mode
@abhishek-pratap-4927
Last seen 7.9 years ago
United States
Just wondering if someone knows or have come up with an implementation of interactive heatmap using ggvis. Any other tools/pointers welcome too. Cheers! -Abhi
• 2.7k views
ADD COMMENT
0
Entering edit mode
@steve-lianoglou-2771
Last seen 13 months ago
United States
Hi, On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: > Just wondering if someone knows or have come up with an implementation > of interactive heatmap using ggvis. Any other tools/pointers welcome I wasn't there myself, but I think the RStudio/shiny folks presented something like this at the bioc conference last year ... namely: http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf HTH, -steve -- Steve Lianoglou Computational Biologist Genentech
ADD COMMENT
0
Entering edit mode
Hi Steve I should have mentioned that I am using shiny interface to give user some options to do data filtering. I am interested in finding if there are tools that can help me get tootip and brushing capability. What I mean by brushing is to select subset of the data from the heatmap directly and tooltip to give the user point level info on the heatmap. Cheers! -Abhi On Mon, Aug 18, 2014 at 3:55 PM, Steve Lianoglou <lianoglou.steve at="" gene.com=""> wrote: > Hi, > > On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: >> Just wondering if someone knows or have come up with an implementation >> of interactive heatmap using ggvis. Any other tools/pointers welcome > > I wasn't there myself, but I think the RStudio/shiny folks presented > something like this at the bioc conference last year ... namely: > > http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf > > HTH, > -steve > > -- > Steve Lianoglou > Computational Biologist > Genentech
ADD REPLY
0
Entering edit mode
Hi Abhi, Have you tried Epivizr? I haven't done much with that package, but it might be more useful for what you are trying to do. Best, Jim On Mon, Aug 18, 2014 at 7:17 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> wrote: > Hi Steve > > I should have mentioned that I am using shiny interface to give user > some options to do data filtering. I am interested in finding if there > are tools that can help me get tootip and brushing capability. What I > mean by brushing is to select subset of the data from the heatmap > directly and tooltip to give the user point level info on the heatmap. > > Cheers! > -Abhi > > On Mon, Aug 18, 2014 at 3:55 PM, Steve Lianoglou > <lianoglou.steve at="" gene.com=""> wrote: > > Hi, > > > > On Mon, Aug 18, 2014 at 3:49 PM, Abhishek Pratap <abhishek.vit at="" gmail.com=""> > wrote: > >> Just wondering if someone knows or have come up with an implementation > >> of interactive heatmap using ggvis. Any other tools/pointers welcome > > > > I wasn't there myself, but I think the RStudio/shiny folks presented > > something like this at the bioc conference last year ... namely: > > > > > http://www.bioconductor.org/help/course- materials/2013/BioC2013/ShinyInBioinformatics.pdf > > > > HTH, > > -steve > > > > -- > > Steve Lianoglou > > Computational Biologist > > Genentech > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]]
ADD REPLY
0
Entering edit mode
Ying Chen ▴ 110
@ying-chen-4756
Last seen 9.6 years ago
You'd better ask Winston Chang at ggvis google group (https://groups.google.com/forum/?hl=en#!forum/ggvis) directly, although he is kind dormant for the last couple of days :). Ying -----Original Message----- From: bioconductor-bounces@r-project.org [mailto:bioconductor- bounces@r-project.org] On Behalf Of Abhishek Pratap Sent: Monday, August 18, 2014 6:50 PM To: bioconductor at r-project.org Subject: [BioC] ggvis: interactive heatmaps Just wondering if someone knows or have come up with an implementation of interactive heatmap using ggvis. Any other tools/pointers welcome too. Cheers! -Abhi _______________________________________________ Bioconductor mailing list Bioconductor at r-project.org https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor Confidentiality Note:\ This e-mail, and any attachment t...{{dropped:11}}
ADD COMMENT

Login before adding your answer.

Traffic: 671 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6