I'm trying to use DESeq2 to perform something like a one-way ANOVA on 3

groups of samples. I've seen references to DESeq2's capability of

performing similar ANOVAs such as this forum thread:

http://seqanswers.com/forums/showthread.php?t=16539

However, I can't seem to find anything in DESeq2's manual about how to

do this. I have my data inputted successfully, and I've been able to

perform pairwise comparisons using DESeq2 but I haven't been able to

extract one p-value across 3 different groups. Is there somewhere that

explains this functionality? Or some sort of example code run through?

Thanks for your help.

@Michael Love,

I have a follow-up question here on DESeq2 One-way ANOVA with 3 sample groups. I honestly speaking did not understand well how this One-way ANOVA works here. Basically, my question is I would like to do get differentially expressed genes in one condition compared to the other two conditions. This means I have three groups(Cancer_Staging_1, Cancer_Staging_2, and Cancer_Staging_3). I want to see genes specifically expressed in Cancer_Staging_1 considering Cancer_Staging_2 and Cancer_Staging_3as a comparison group at a time.

Best, AD